Oncotarget

Research Papers:

CNS germinomas are characterized by global demethylation, chromosomal instability and mutational activation of the Kit-, Ras/Raf/Erk- and Akt-pathways

Simone Laura Schulte, Andreas Waha, Barbara Steiger, Dorota Denkhaus, Evelyn Dörner, Gabriele Calaminus, Ivo Leuschner and Torsten Pietsch _

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Oncotarget. 2016; 7:55026-55042. https://doi.org/10.18632/oncotarget.10392

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Abstract

Simone Laura Schulte1, Andreas Waha1, Barbara Steiger1, Dorota Denkhaus1, Evelyn Dörner1, Gabriele Calaminus2, Ivo Leuschner3, Torsten Pietsch1

1Department of Neuropathology, University of Bonn Medical Center, Bonn, Germany

2Department of Pediatric Hematology/Oncology, University of Bonn Medical Center, Bonn, Germany

3Kiel Paediatric Tumor Registry, Department of Paediatric Pathology, University Hospital of Schleswig-Holstein, Campus Kiel, Germany

Correspondence to:

Torsten Pietsch, email: t.pietsch@uni-bonn.de

Keywords: germinoma, c-Kit, Ras, hypomethylation, genomics

Received: March 11, 2016     Accepted: June 13, 2016     Published: July 04, 2016

ABSTRACT

CNS germinomas represent a unique germ cell tumor entity characterized by undifferentiated tumor cells and a high response rate to current treatment protocols. Limited information is available on their underlying genomic, epigenetic and biological alterations. We performed a genome-wide analysis of genomic copy number alterations in 49 CNS germinomas by molecular inversion profiling. In addition, CpG dinucleotide methylation was studied by immunohistochemistry for methylated cytosine residues. Mutational analysis was performed by resequencing of candidate genes including KIT and RAS family members. Ras/Erk and Akt pathway activation was analyzed by immunostaining with antibodies against phospho-Erk, phosho-Akt, phospho-mTOR and phospho-S6. All germinomas coexpressed Oct4 and Kit but showed an extensive global DNA demethylation compared to other tumors and normal tissues. Molecular inversion profiling showed predominant genomic instability in all tumors with a high frequency of regional gains and losses including high level gene amplifications. Activating mutations of KIT exons 11, 13, and 17 as well as a case with genomic KIT amplification and activating mutations or amplifications of RAS gene family members including KRAS, NRAS and RRAS2 indicated mutational activation of crucial signaling pathways. Co-activation of Ras/Erk and Akt pathways was present in 83% of germinomas. These data suggest that CNS germinoma cells display a demethylated nuclear DNA similar to primordial germ cells in early development. This finding has a striking coincidence with extensive genomic instability. In addition, mutational activation of Kit-, Ras/Raf/Erk- and Akt- pathways indicate the biological importance of these pathways and their components as potential targets for therapy.


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