DDA1 promotes stage IIB–IIC colon cancer progression by activating NFκB/CSN2/GSK-3β signaling

INTRODUCTION

Risk of tumor recurrence is clinically determined based on the pathological characteristics of the tumor. In colon cancer, the third most malignant cancer and the fourth leading cause of cancer-related mortality worldwide [1], high recurrence risk factors include tumor stage, perforation, presentation with obstruction, poor histological differentiation, lymphovascular invasion, or perineural invasion [5, 6]. Approximately 30% of colon cancer patients present with stage II cancer [2, 3]. Because some patients with stage II colon cancer benefit from post-operative adjuvant chemotherapy [4], routine 5-fluorouracil (5-FU)-based treatment is recommended only to patients with conventional high risk of tumor recurrence.

Nevertheless, approximately 20–30% of patients with stage II colon cancer undergoing 5-FU-based adjuvant chemotherapy still develop local recurrences or metachronous metastases after tumor resection [3, 7, 8]. This indicates that conventional high-risk factors cannot accurately evaluate the risk of recurrence and predict the benefit of adjuvant chemotherapy in these patients. Currently, no biomarkers except the mismatch repair (MMR) gene are available to differentiate patients with stage II colon cancer with a high vs. low risk of recurrence [6, 9]. This is partially due to an incomplete understanding of the molecular mechanisms of stage II colon tumorigenesis and recurrence. It is widely accepted that mutations in various genes, such as in APC, KRAS, p53, and BRAF, are involved in colon cancer tumorigenesis and progression [10–12]. These genes have also been extensively explored in stage II colon cancer for identifying the risk of tumor recurrence and for predicting chemosensitivity [13]. However, their roles in evaluating the benefits of chemotherapy following tumor relapse have not been widely explored in the clinical setting. Therefore, to better design a strategy for individualized chemotherapy, it is pivotal that researchers identify biomarkers that not only participate in colon cancer tumorigenesis and progression, but also predict chemosensitivity and the risk of tumor recurrence in patients with stage II cancer.

Emerging evidence indicates that aberrant activation of nuclear factor kappaB (NFκB) promotes tumorigenesis, progression, and chemoresistance [14]. NFκB is a transcription factor that participates in immune responses, cell proliferation, apoptosis, and cell cycle regulation [15]. Abnormal activation of NFκB is often associated with progression of many diseases, including chronic inflammation, autoimmune diseases, and cancer [16-18]. Our recently published results also indicate that canonical activation of NFκB may have a prognostic role in stage II colon cancer [19]. Gewurz, et al. used a genome-wide small interfering RNA (siRNA) screening approach to identify potential intrinsic mediators for activating NFκB, and found that a new gene, DET1 and DDB1 associated 1 (DDA1, also known as PCIA1), may activate NFκB via degradation of IκBα [20]. However, whether DDA1 indeed activates the NFκB pathway, thereby promoting tumorigenesis and contributing to colon cancer recurrence, has not been investigated.

DDA1 was first discovered as a gene with a 1086-bp cDNA and a 309-bp open reading frame [21]. DDA1 encodes an 11-kDa protein with 102 AA residues whose orthologs share 82–92% identity with Arabidopsis, invertebrates, and vertebrates [22, 23]. Binding of DDA1 to DET1 and DDB1 together results in DDD complexes, which recruit specific UBE2E enzymes such as UBE2E1, UBE2E2, and UBE2E3, to form DDD-E2 complexes [23]. A component of the DDD-E2 complexes provides a platform for interaction with Cullin4A (Cul4A) and beta-transducing (also called WD40) repeat proteins, which indicate that the complex may be involved in ubiquitination and subsequent proteasomal degradation of target proteins [22, 24]. Moreover, DDA1 was demonstrated to be a core subunit of multiple Cul4-based E3 ligases (CRLs) and may regulate CRL4s, especially in promoting cell cycle progression and DNA replication and repair [25]. In addition, DDA1 was also shown to interact with onco-proteins such as EIF3S10, PSAP and ACTN4 [26]. These results indicate that DDA1 may be involved in tumor formation, invasion and metastasis. Whether DDA1 has prognostic value in patients with stage II colon cancer has not been assessed previously.

These results prompted us to investigate whether DDA1 participated in stage II colon cancer tumorigenesis and tumor recurrence via the modulation of NFκB/CSN2/GSK3β signaling, and could serve as a prognostic biomarker. We report that (1) DDA1 and nuclear p65 levels were increased in stage II colon cancers, (2) both DDA1 and nuclear p65 levels were significantly higher in tumors of patients with relapsed stage II cancer as compared to nonrelapsed stage II, (3) positive expression of DDA1 either alone or in combination with p65 nuclear translocation was associated with poor prognosis in stage II colon cancer, especially in stage IIB–IIC patients, and (4) DDA1 promoted proliferation, increased cell cycle S-phase arrest, inhibited 5-FU-induced apoptosis, and promoted invasion and the epithelial–mesenchyme transition (EMT) through the NFκB/CSN2/GSK3β pathway. Taken together, these results indicate that DDA1 promotes the progression of stage IIB–IIC colon cancers by activating the NFκB/CSN2/GSK-3β pathway. DDA1 may be a powerful prognostic indicator and predictor of tumor recurrence risk in patients with stage IIB–IIC colon cancer.

RESULTS

Overexpression of DDA1 and activation of NFκB are negatively correlated with stage IIB–IIC colon cancer patient survival

To investigate whether DDA1 alone or in combination with NFκB predicts the risk of tumor recurrence in patients with stage II colon cancer, levels of DDA1 and nuclear p65 were assessed. DDA1 mRNA expression was greater in the tumors of all patients with stage II colon cancer than in adjacent normal tissues of 30 randomly selected patients from the cohort (Figure 1A). DDA1 expression was significantly higher in the tumors of relapsed patients than in the tumors of nonrelapsed patients (Figure 1B). Further, DDA1 protein levels and the nuclear translocation of p65 protein, an indication of activation of NFκB, were also higher in tumor samples than in adjacent normal tissues, and in relapsed patient samples than in nonrelapsed samples (Figure 1C and 1D). Taken together, these results suggest that DDA1 upregulation and NFκB activation may be associated with both development and recurrence of stage II colon cancer.

Immunohistochemical (IHC) staining was used to quantify DDA1 levels as well as NFκB pathway activation, as measured by p65 nuclear translocation, in 101 relapsed and 178 nonrelapsed patients with stage II colon cancer. DDA1 showed mainly positive staining in the cytoplasm of tumor cells and was often accompanied by NFκB subunit p65 nuclear translocation in the tumor cells of relapsed patients with stage II colon cancer (Figure 1, 1E1–1E4). In patient tumors with the same degree of differentiation, the relapsed patients had significantly higher expression of DDA1 than nonrelapsed patients (Figure 1, 1E5–1E10). A significantly higher proportion (65.4%) of relapsed patients showed strong tumor DDA1 staining as compared to nonrelapsed patients (29.8%) (Table 1). The number of relapsed patients with weak (28.7%) and negative (5.9%) tumor DDA1 staining was significantly lower than the number of nonrelapsed patients with weak (40.4%) and negative tumor staining (29.8%) (Table 1). Relapsed patients (60.4%) exhibited higher nuclear p65 staining as compared to nonrelapsed patients (36.5%) (P < 0.001, Table 1). No significant association was observed between DDA1 or nuclear p65 staining and age, gender, location of the tumor, or vessel invasion (P > 0.05, Table 2).

DDA1 and nuclear p65 staining were positively correlated with pT stage, American Joint Committee on Cancer (AJCC) stage and tumor differentiation in patients with stage II cancer (P < 0.05, Table 2). Further, 60.5% (72/119), 37.6% (38/101) and 27.1% (16/59) of patients with nuclear p65 staining exhibited high, weak, and negative DDA1 expression, respectively (P < 0.001, Table 2). Taken together, these results indicate that DDA1 upregulation and NFκB activation are related to recurrence in stage II colon cancer, and DDA1 contributes to the activation of NFκB.

Kaplan–Meier analysis with the log-rank test was further used to investigate whether these changes are associated with patient survival. DDA1 expressing patients had lower DFS and OS than those without DDA1 expression (Figure 2A). Nuclear translocation of p65 did not significantly impact patient OS (Figure 2B). These results indicate that DDA1 has more power to predict survival than nuclear p65 translocation. However, patients with both DDA1 expression and nuclear p65 translocation had worse rates of DFS and OS than patients with either DDA1 expression or nuclear p65 translocation, and then patients negative for both (Figure 2C).

These results prompted us to further investigate whether these markers have any predictive value for substages, namely, AJCC stage. DDA1 expression together with p65 nuclear translocation correlated with reduced survival in patients with stage IIB (DFS: P = 0.005; OS: P = 0.005, Figure 3A) or stage IIC colon cancer (DFS: P = 0.021; OS: P = 0.011, Figure 3B), but not in patients with stage IIA colon cancer (DFS: P = 0.059; OS: P = 0.063, Figure 3C). Univariate and multivariate analyses of DDA1 expression, nuclear p65 translocation, and clinical features such as gender and age, and clinical pathological stages further confirmed that DDA1, either alone or in combination with nuclear p65 translocation is an independent prognostic factor for high risk of tumor recurrence (Table 3).

DDA1 accelerates colon cancer cell proliferation and promotes cell cycle progression

Analysis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways suggest that DDA1 may be involved in the development of colorectal cancer, focal adhesions, apoptosis, and activation of the NFκB signal pathway (Figure S1 and S2). Therefore, the effects of DDA1 protein on colon cancer cell proliferation and cell cycle progression were investigated using overexpression and knockdown. As no cell lines were from patients with IIB – IIC colon cancer, the protein levels of DDA1 from eight general colon cancer cell lines and two normal colon epithelial cell lines were analyzed. The DLD-1 and HT-29 cell lines with low DDA1 expression and SW480 and SW620 cell lines with high DDA1 expression were studied (Figure 4A). We over-expressed DDA1 in low-expressing lines with lentiviral expressing (LV)-DDA1 vector (LV-DDA1), or knocked down DDA1 in high-expressing lines with lentiviral expressing two different shRNAs (shDDA1#1 and shDDA1#2) (P < 0.05, Figure 4B). In vivo, the overexpression or knockdown of DDA1 in cells generated larger or smaller xenografts, respectively, as measured by tumor weights and volumes in nude mice as compared to controls (P < 0.05, Figure 4C). Consistently, DDA1 knockdown with shDDA1#2 suppressed the cancer cell proliferation in vitro and in vivo (Figure S3A and S3B).

As changes in cell cycle are closely related to cell proliferation, cell cycle progression was further studied in the transfected cells. Fluorescence-activated cell sorting analysis showed that DDA1 overexpression or knockdown (with shDDA1#1 or shDDA1#2) resulted in decreased G1 phase and increased S phase cells or increased G1 phase and decreased S phase cells, respectively (Figure 4D and S4A). In addition, overexpression or knockdown induced the increase or decrease, respectively, in c-myc, CyclinD1, CDK4, and CDK6 expression, indicating proliferation and G1 to S phase transition of cell cycle (Figure 4E and S4B). Further, DDA1-overexpressing xenografts from nude mice had significantly higher Ki-67, c-myc, and CyclinD1 levels than controls (Figure 4F and S5). These results indicate that DDA1 promotes tumor cell proliferation by inducing S phase arrest.

DDA1 overexpression inhibits apoptosis in 5-FU-induced colon cancer cells

All patients with stage II colon cancer in this study received 5-FU-based adjuvant chemotherapy. We assessed whether DDA1 was upregulated by 5-FU. After treating colon cancer cell lines with different 5-FU concentrations for 48 h, DDA1 mRNA and protein levels were evaluated. There were no differences among the treated and untreated cells (data not shown), indicating that 5-FU did not upregulate DDA1 expression.

The effects of DDA1 on apoptosis inhibition in 5-FU-induced colon cancer cells was investigated using Annexin-V/PI staining, or by measuring apoptosis-related proteins such as cleaved caspase-3 and cleaved poly (ADP-ribose) polymerase (PARP). Annexin V/PI staining revealed that DDA1 overexpression in HT29 cells or knockdown in both DDA1 overexpressed-HT-29 cells and SW480 cells expressing DDA1 at a high level with shDDA1#1 rendered the cells resistant or sensitive to apoptosis induced by different concentrations of 5-FU, respectively (P < 0.05 for both, Figure 5A and 5B). In addition, the overexpression and knocked down decreased and increased 5-FU-induced caspase-3 and PARP cleavage, respectively (Figure 5C and 5D). Further, the specific target effects of the increase in the cleaved caspase-3 and PARP by shDDA1#1 were also confirmed by using the secondary shRNA, shDDA1#2 in both SW480 and SW620 cells (Figure 5E). These results show that DDA1 prohibited apoptosis in 5-FU-induced colon cancer cells and decreased chemosensitivity to 5-FU by inhibiting the activation of caspase-3 and PARP.

DDA1 enhances invasion and induces the epithelial to mesenchymal transition

DDA1 overexpressing cell lines (HT-29 and DLD-1) or the knocked down cells (SW480 and SW620) exhibited enhanced or reduced invasion measured using transwell invasion assay, and wound healing capacity monitored using wound healing assay, as compared to the corresponding control cells, respectively (P < 0.05, Figure 6A–6B and S6A–S6B). DDA1 overexpression or knockdown resulted in increased or decreased morphological transition of cells from epithelial phenotype to mesenchyme-like morphology (EMT), respectively (Figure 6C). This result indicates that DDA1 triggers the EMT in colon cancer cells.

EMT, an essential mechanism in embryonic development and tissue repair, contributes to the progression of cancer and organ fibrosis [28]. During EMT, epithelial protein E-cadherin is downregulated, while mesenchyme proteins such as N-cadherin and vimentin are upregulated [29]. Overexpression or knockdown of DDA1 resulted in decreased or increased expression of epithelial protein E-cadherin, respectively, while expression of mesenchyme proteins N-cadherin and Vimentin was increased or decreased in vitro (Figure 6D and S6C). Further, DDA1 overexpression upregulated Snail, an EMT inductor (Figure 6D and S7) [30]. In vivo, xenografted DDA1-overexpressing tumor cells had lower E-cadherin levels, but higher expression of nuclear β-catenin, N-cadherin, vimentin, and Snail than controls (Figure 6E and S7). These results suggest that DDA1 promotes invasion and migration, and induces the EMT in colon cancer cells.

DDA1 activates NFκB/CSN2/GSK3β signaling

Classical activation of NFκB is involved in tumor proliferation, anti-apoptosis, and EMT [15, 28]. In addition, NFκB activation is required for the induction of the CSN2/GSK3β pathway, which enhances tumor invasion and metastasis [31]. CSN2, the second and most conserved subunit of the COP9 signalosome in eukaryotes, is also targeted by NFκB [32]. Therefore, we investigated whether DDA1 activates NFκB/CSN2/GSK3β signaling. We found that DDA1 overexpression or the knockdown with shDDA1#1 increased or decreased nuclear p65 translocation, indicating classical activation of NFκB, respectively (Figure 7A). We also demonstrated that the DDA1 overexpression or knockdown with shDDA1#1 promoted or inhibited IKKβ phosphorylation, thereby upregulating p-IκBα, which resulted in nuclear p65 translocation via degradation of p-IκBα, respectively (Figure 7B). These results indicate that DDA1 activates the classical NFκB pathway by increasing p-IKKβ expression.

p65 nuclear translocation reportedly induces CSN2 upregulation followed by phosphorylation of GSK3β at serine 9, which promotes tumor metastasis and EMT [31]. Overexpression or knockdown of DDA1 resulted in up- or downregulation of CSN2 and p-GSK3β, respectively (Figure 7B). Increased CNS2 and p-GSK3β levels induced by DDA1 overexpression were markedly attenuated following treatment with BAY-11-7082, an inhibitor of phosphorylation and degradation of IκBα, Helenalin, a p65 inhibitor, or siRNA specific for IKKβ (Figure 7C–7E). To directly assess whether DDA1 activated NFκB/CSN2/GSK3β signaling by regulating IKKβ expression, DDA1 and p-IKKβ were analyzed by immunofluorescence. DDA1 was co-expressed with p-IKKβ (Figure 8A), directly bound to p-IKKβ and stabilized its expression (Figure 8B). Functionally, silencing IKKβ with IKKβ siRNA inhibited the increased proliferation, migration, and invasion promoted by DDA1 (Figure 8C–8E). Lastly, the specific target effects of the DDA1-mediated p65 nuclear translocation and p-IKKβ stabilization were further confirmed by using the secondary shRNA shDDA1#2 to inhibit DDA1 activity in both SW480 and SW620 cells (Figure S8A and S8B). These results indicate that DDA1 promotes colon cancer cell proliferation, migration, and invasion by activating NFκB/CSN2/GSK3β signaling. DDA1 specifically promotes and stabilizes p-IKKβ, which increases p-IκBα, p65 nuclear translocation, and expression of CNS2 and p-GSK3β.

DISCUSSION

We observed that DDA1 predicts tumor recurrence and poor prognosis in patients with stage II colon cancer, especially for patients with stage IIB–IIC disease undergoing post-operative chemotherapy with 5-FU/LV or FOLFOX4. DDA1 overexpression inhibited apoptosis in 5-FU-induced colon cancer cells, although DDA1 was not upregulated by 5-FU treatment. These findings highlight the critical role of DDA1 in evaluating the risk of tumor recurrence and chemosensitivity to 5-FU in patients with stage II colon cancer. Further, these results suggest that patients with stage IIB–IIC colon cancer with DDA1-positive expression have a high risk of recurrence and should be considered for stronger chemotherapy regimens. Although the retrospective studies reported here were performed with only 279 patients, they provide a strong justification for large-scale retrospective and prospective studies in the future.

Tumor cell proliferation and cell cycle changes play critical roles in post-operative tumor relapse [33]. In the present study, we found that DDA1 promoted colon cancer cell proliferation and positively modulated cell cycle proteins including Ki-67, CyclinD1 and CDK4/6 in vitro and in vivo, which resulted in cell cycle S-phase arrest. These results indicate that DDA1 plays a critical role in tumorigenesis in stage II colon cancer. These findings are in agreement with the current view that oncogenes enhance tumorigenesis by influencing cell cycle progression [34]. For example, knockdown of the tumor genes such Cul4A, Cul4B, and Wdr23 increased double-stranded DNA breaks following changes in cell cycle [35, 36]. Double-stranded DNA breaks in DDA1^−/− cells increased in a similar manner as in Cul4A^−/−, Cul4B^−/−, and Wdr23^−/− cells [25], which play important roles in the proliferation of cells and cell cycle modulation.

It is widely accepted that tumor invasion and metastasis are the main driving forces behind tumor recurrence and chemoresistance [37]. In the present study, DDA1 overexpression was positively associated with T stage, AJCC stage, and differentiation in patients with stage II colon cancer. More importantly, DDA1-positive expression incidence was significantly higher in the recurrent tumor group than in the non-recurrent group. DDA1 overexpression enhanced the invasive and wound-healing capabilities of colon cancer cell lines. In addition, it is widely accepted that EMT is an important process during embryonic development, invasion, metastasis, and chemoresistance [38]. We demonstrated here that DDA1 overexpression promotes the EMT of colon cancer cells with changes in cell morphology, along with downregulation of the epithelial protein E-cadherin and upregulation of the mesenchyme molecules N-cadherin and Vimentin. These findings provide further evidence to support the hypothesis that DDA1 promotes tumor recurrence in patients with stage II colon cancer by enhancing the invasive and metastatic abilities of cancer cells.

NFκB transcription factors are homodimers or heterodimers of NFκB1 (p50), NFκB2 (p52), RelA (p65), RelB, or cREL [39], and have been widely reported to participate in tumor initiation, cell proliferation, apoptosis, chemoresistance, and the EMT [28, 40-42]. In the canonical NFκB pathway, IKKβ is activated with increased expression of p-IKKβ. NFKBIA (IκBα), NFKBIB (IκBβ) and NFKBIE (IκBε) are then phosphorylated, leading to their proteasomal degradation and p65 nuclear translocation [44]. In the present study, DDA1-positive expression was generally accompanied by p65 nuclear translocation. With increased DDA1 expression, rates of p65 nuclear translocation increased gradually. Furthermore, DDA1 alone or in combination with nuclear p65 positive expression predicted poorer DFS and OS, especially in patients with stage IIB-IIC colon cancer. These discoveries indicate that the underlying mechanism by which DDA1 promotes stage II colon cancer progression is related to canonical activation of the NFκB pathway. p65 nuclear translocation stabilized the expression of Snail and inhibited its phosphorylation and ubiquitination by blocking its binding to GSK3β, and inducing CSN2 and the EMT [31]. Mechanistically, we found that DDA1 promoted proliferation and invasion in colon cancer cells by enhancing and stabilizing p-IKKβ and triggering the phosphorylation and degradation of IκBα followed by the activation of NFκB/CSN2/GSK3β signaling. Consistently, these effects are suppressed by treatment with inhibitors of the phosphorylation and degradation of IκBα or of p65 nuclear translocation, or transfection with siRNAs specific for IKKβ. Importantly, the molecular mechanisms by which DDA1 increases and stabilizes the expression of p-IKKβ remain unclear. Further investigation is required to determine whether DDA1 activates the canonical NFκB pathway through other approaches.

Notably, only 50% of the patients in this study with stage II colon cancer exhibited DDA1-positive expression in combination with p65 nuclear translocation (Table 2). These data highlight that in addition to the NFκB pathway, other signaling pathways may also be involved in DDA1-related tumorigenesis [45]. This interpretation is further supported by the analysis of GO and KEGG pathways and the observation that DDA1 also activates other signal pathways in colon cancers (Figure S1 and S2).

In summary, DDA1 promotes the progression of stage II colon cancer through the activation of the NFκB/CSN2/GSK3β pathway. DDA1, together with NFκB status, can aid in determining the risk of tumor recurrence in patients with stage II colon cancer, and may be a potential marker to evaluate chemosensitivity to 5-FU. These findings could contribute to improved personalized chemotherapy options for patients with stage IIB–IIC colon cancer. However, the cell lines used in the present study were not specifically from patients with stage II colon cancer. More investigations using stage II colon cancer cell lines and large-sample clinical trials are needed. In addition, the potential for use of DDA1 as a prognostic indicator in patients with other stages of colon cancer should also be explored.

MATERIALS AND METHODS

Patients and tissue samples

Tissue specimens were obtained from 279 patients with stage II colon cancer (Table S1) who underwent tumor resection at Shanghai Jiaotong University Affiliated First People’s Hospital, Shanghai, China, between 2001 and 2007. All patients were categorized into tumor recurrence and non-recurrence groups based on the recurrent tumor conditions. None of the patients underwent anticancer treatment before surgery. Diagnoses of all patients were confirmed without microsatellite instability high (MSI-H) pathologically. All patients had at least one conventional high-risk factor for tumor recurrence and received 5-FU-based chemotherapy (5-FU/LV or FOLFOX4; Table S2) after surgery according to National Comprehensive Cancer Network guidelines. All patients signed informed consent forms before enrolling in the study. The study was approved by the Institutional Research Ethics Committee of the hospital.

Cell culture, reagents, and transfection

Cells (SW480, DLD-1, HT-29, RKO, HCT116, HCT8, LoVo, SW620, NCM460, FHC) used in this study were purchased from the American Type Culture Collection. The cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM) (GIBCO, Grand Island, NY) supplemented with 10% fetal bovine serum (GIBCO), 1% penicillin, and streptomycin with humidity at 37°C and 5% CO₂. Cell lines overexpressing DDA1 were constructed by transfection with lentiviral vectors encoding human DDA1 (LV-DDA1), and DDA1 knockdown cell lines were established through transfection with either shDDA1#1 or shDDA1#2. IκB kinase complex β (IKKβ) was knocked down by transfection with siRNA IKKβ plasmids. LV-vector and LV-Scramble were used as normal controls. All interference sequences are shown in Table S3.

qRT-PCR, western blotting, and immunohistochemical staining

Quantitative reverse transcription-polymerase chain reaction (qRT-PCR), western blotting, and immunohistochemical (IHC) staining were performed, and IHC staining scores were evaluated as described previously [19]. Primers used in qRT-PCR are summarized in Table S4. Antibodies are provided in Table S5.

In vitro proliferation, invasion and wound healing assays

For proliferation assays, transfected HT-29, DLD-1, SW480 and SW620 cells were seeded at 1 × 10⁵ cells per well into 96-well plates. Cell Counting Kit-8 (Beyotime, Biotechnology, Jiangsu, China) was used to test absorbance at 560 nm for each well at different time points using a micro-plate reader (Bio-Rad, Hercules, CA).

To determine the effects of DDA1 on invasion, 1 × 10⁵ cells were seeded onto matrigel-coated chambers (BD Biosciences, San Jose, CA), with serum-free media in the upper chambers and complete media in the lower chambers, and incubated for 24 h. After fixing and staining with 0.1% crystal violet, stained cells were counted and photos were taken using a light microscope (Olympus Corporation, Center Valley, PA).

In wound healing assays, cells were plated into six-well plates. Wounds were scraped when cells reached 90% confluence. The cells were washed with phosphate-buffered saline (PBS) and wound widths were measured and analyzed at 0, 24, 48 and 72 h.

Immunofluorescence analysis

Cells were plated on glass-bottom dishes and incubated overnight. After washing with PBS three times, cells were fixed by 4% paraformaldehyde for 15 min and washed three times with PBS. Cells were permeabilized with 0.1% Triton X-100 for 10 min, followed by incubation with p65 primary antibody overnight at 4°C. Cells were then incubated with Alexa Fluor 488-conjugated secondary antibody (Santa Cruz Biotechnology, Santa Cruz, CA) for 2 h at room temperature. 4′,6-Diamidino-2-phenylindole (DAPI) (Roche, Basle, Switzerland) was used to stain nuclei. Fluorescence images were collected using a confocal laser-scanning microscope (TCS SP8; Leica, Wetzlar, Germany).

Flow cytometry assay for cell cycle and apoptosis

Cells were collected at the logarithmic stage of growth, and were centrifuged and then resuspended at 2 × 10⁶ cells/mL. After 30 min incubation in 80% ethanol at 4°C, propidium iodide (PI) staining was utilized to measure cell cycle stage using flow cytometry (BD Biosciences). The Annexin V-APC/PI Apoptosis Kit (eBioscience, San Diego, CA) was used for the apoptosis assay according to the manufacturer’s instructions. Flow cytometery was performed to determine cell number, and data were analyzed using FlowJo9.1 software (Tree Star Inc., Ashland, OR).

Co-immunoprecipitation assay

HT-29 and DLD-1 cell lines were transfected with empty vector or LV-DDA1 plasmids. SW480 and SW620 cell lines were transfected with Scramble or DDA1 shRNA plasmids. Cell lysate was immunoprecipitated with a DDA1 antibody. The p-IKKβ antibody was used to detect the level of p-IKKβ.

Xenografted tumors of nude mice

Colon cancer cells HT-29/vector, HT-29/LV-DDA, SW480/Scramble, and SW480/shDDA1#1 (1 × 10⁷ cells in 100 μL of DMEM) were injected subcutaneously into the flanks of nude mice (4 week old, male, Shanghai SLAC Laboratory Animal Co., Ltd., Shanghai, China). Tumor weights and volumes were measured every three days. All mice were killed after four weeks, and tumor samples were harvested and embedded in paraffin. Procedures involving animals conformed to the guidelines of the Institutional Animal Care and Use Committee of Shanghai Jiaotong University Affiliated Shanghai First People’s Hospital.

Statistical analysis

Chi-square test or Fisher’s exact test was used to compare the differences in categorical variables. Student’s t-test or one-way analysis of variance was used to analyze the differences in continuous variables. Kaplan-Meier analyses with log-rank tests were used to evaluate disease-free survival (DFS) and overall survival (OS). The Cox proportional hazard model was performed to estimate the hazard ratio and 95% confidence intervals for DFS and OS. SPSS 19.0 statistical software (SPSS Inc., Chicago, IL) was used to analyze all data. P < 0.05 was regarded as statistically significant.

GRANT SUPPORT

This study was supported by funds from the National High Technology Research and Development Program of China (SS2014AA020803), National Natural Science Foundation of China (81172328, 81220108021, 81302083, 81272750), Project of Shanghai Science and Technology Commission (124119a1700 and 14411950502), Joint Research Projects of Shanghai Municipal Hospital (SHDC12012105), Project of Shanghai Jiaotong University (YG2012ZD01), Project of Songjiang District (0702N14001), the National Institutes of Health of America (1R01CA166144) and core facilities grant for the Comprehensive NeuroAIDS Center (CNAC NIMH Grant Number P30MH092177).

CONFLICTS OF INTEREST

No potential conflicts of interest were disclosed.

REFERENCES

1. Siegel R, Ma J, Zou Z, Jemal A. Cancer statistics, 2014. CA Cancer J Clin. 2014; 64:9–29.

2. Cartwright T, Chao C, Lee M, Lopatin M, Bentley T, Broder M, Chang E. Effect of the 12-gene colon cancer assay results on adjuvant treatment recommendations in patients with stage II colon cancer. Curr Med Res Opin. 2014; 30:321–328.

3. Kopetz S, Tabernero J, Rosenberg R, Jiang ZQ, Moreno V, Bachleitner-Hofmann T, Lanza G, Stork-Sloots L, Maru D, Simon I, Capella G, Salazar R. Genomic Classifier ColoPrint Predicts Recurrence in Stage II Colorectal Cancer Patients More Accurately Than Clinical Factors. Oncologist. 2015; 20:127–133.

4. Figueredo A, Charette ML, Maroun J, Brouwers MC, Zuraw L. Adjuvant therapy for stage II colon cancer: a systematic review from the Cancer Care Ontario Program in evidence-based care’s gastrointestinal cancer disease site group. J Clin Oncol. 2004; 22:3395–3407.

5. Gertler R, Rosenberg R, Schuster T, Friess H. Defining a high-risk subgroup with colon cancer stages I and II for possible adjuvant therapy. Eur J Cancer. 2009; 45:2992–2999.

6. Engstrom PF, Arnoletti JP, Benson AB 3rd, Chen YJ, Choti MA, Cooper HS, Covey A, Dilawari RA, Early DS, Enzinger PC, Fakih MG, Fleshman J Jr, Fuchs C, et al. NCCN Clinical Practice Guidelines in Oncology: colon cancer. J Clin Oncol 2010; 1999:1356–1363.

7. Uen YH, Lin SR, Wu DC, Su YC, Wu JY, Cheng TL, Chi CW, Wang JY. Prognostic significance of multiple molecular markers for patients with stage II colorectal cancer undergoing curative resection. Ann Surg. 2007; 246:1040–1046.

8. Gray RG, Quirke P, Handley K, Lopatin M, Magill L, Baehner FL, Beaumont C, Clark-Langone KM, Yoshizawa CN, Lee M, Watson D, Shak S, Kerr DJ. Validation study of a quantitative multigene reverse transcriptase-polymerase chain reaction assay for assessment of recurrence risk in patients with stage II colon cancer. J Clin Oncol. 2011; 29:4611–4619.

9. Ribic CM, Sargent DJ, Moore MJ, Thibodeau SN, French AJ, Goldberg RM, Hamilton SR, Laurent-Puig P, Gryfe R, Shepherd LE, Tu D, Redston M, Gallinger S. Tumor microsatellite-instability status as a predictor of benefit from fluorouracil-based adjuvant chemotherapy for colon cancer. N Engl J Med. 2003; 349:247–257.

10. Samowitz WS, Sweeney C, Herrick J, Albertsen H, Levin TR, Murtaugh MA, Wolff RK, Slattery ML. Poor survival associated with the BRAF V600E mutation in microsatellite-stable colon cancers. Cancer Res. 2005; 65:6063–6069.

11. Valeri N, Braconi C, Gasparini P, Murgia C, Lampis A, Paulus-Hock V, Hart JR, Ueno L, Grivennikov SI, Lovat F, Paone A, Cascione L, Sumani KM, et al. MicroRNA-135b promotes cancer progression by acting as a downstream effector of oncogenic pathways in colon cancer. Cancer Cell. 2014; 25:469–483.

12. Shi C, Yang Y, Xia Y, Okugawa Y, Yang J, Liang Y, Chen H, Zhang P, Wang F, Han H, Wu W, Gao R, Gasche C, et al. Novel evidence for an oncogenic role of microRNA-21 in colitis-associated colorectal cancer. Gut. 2015, [Epub ahead of print].

13. Zhang JX, Song W, Chen ZH, Wei JH, Liao YJ, Lei J, Hu M, Chen GZ, Liao B, Lu J, Zhao HW, Chen W, He YL, et al. Prognostic and predictive value of a microRNA signature in stage II colon cancer: a microRNA expression analysis. Lancet Oncol. 2013; 14:1295–1306.

14. Shih VF, Tsui R, Caldwell A, Hoffmann A. A single NFkappaB system for both canonical and non-canonical signaling. Cell Res. 2011; 21:86–102.

15. Liu B, Sun L, Liu Q, Gong C, Yao Y, Lv X, Lin L, Yao H, Su F, Li D, Zeng M, Song E. A Cytoplasmic NF-kappaB Interacting Long Noncoding RNA Blocks IkappaB Phosphorylation and Suppresses Breast Cancer Metastasis. Cancer Cell. 2015; 27:370–381.

16. Wu Y, Zhou BP. TNF-alpha/NF-kappaB/Snail pathway in cancer cell migration and invasion. Br J Cancer. 2010; 102:639–644.

17. He L, Guo L, Vathipadiekal V, Sergent PA, Growdon WB, Engler DA, Rueda BR, Birrer MJ, Orsulic S, Mohapatra G. Identification of LMX1B as a novel oncogene in human ovarian cancer. Oncogene. 2014; 33:4226–4235.

18. Gong P, Canaan A, Wang B, Leventhal J, Snyder A, Nair V, Cohen CD, Kretzler M, D’Agati V, Weissman S, Ross MJ. The ubiquitin-like protein FAT10 mediates NF-kappaB activation. J Am Soc Nephrol. 2010; 21:316–326.

19. Zhao S, Jiang T, Tang H, Cui F, Liu C, Guo F, Lu H, Xue Y, Jiang W, Peng Z, Yan D. Ubiquitin D is an independent prognostic marker for survival in stage IIB-IIC colon cancer patients treated with 5-fluoruracil-based adjuvant chemotherapy. J Gastroenterol Hepatol. 2015; 30:680–688.

20. Gewurz BE, Towfic F, Mar JC, Shinners NP, Takasaki K, Zhao B, Cahir-McFarland ED, Quackenbush J, Xavier RJ, Kieff E. Genome-wide siRNA screen for mediators of NF-kappaB activation. Proc Natl Acad Sci U S A. 2012; 109:2467–2472.

21. Wang R, Deng HX, Wang GQ, Yan F, Peng F. The establishment and identification of the stable transfectant of HeLa cell expressing human new gene (PCIA1). Sichuan Da Xue Xue Bao Yi Xue Ban. 2006; 37:335–338.

22. Jin J, Arias EE, Chen J, Harper JW, Walter JC. A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. Mol Cell. 2006; 23:709–721.

23. Pick E, Lau OS, Tsuge T, Menon S, Tong Y, Dohmae N, Plafker SM, Deng XW, Wei N. Mammalian DET1 regulates Cul4A activity and forms stable complexes with E2 ubiquitin-conjugating enzymes. Mol Cell Biol. 2007; 27:4708–4719.

24. Angers S, Li T, Yi X, MacCoss MJ, Moon RT, Zheng N. Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery. Nature. 2006; 443:590–593.

25. Olma MH, Roy M, Le Bihan T, Sumara I, Maerki S, Larsen B, Quadroni M, Peter M, Tyers M, Pintard L. An interaction network of the mammalian COP9 signalosome identifies Dda1 as a core subunit of multiple Cul4-based E3 ligases. J Cell Sci. 2009; 122:1035–1044.

26. Li ZM, Wen YJ, Lai ST, Ni R, Deng HX, Kan B, Li J, Liu J, Jing XM, Cheng P, Shi W, Jia YX. Searching for genes interacting with human PCIA1 gene by using the bacterial two-hybrid system. Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2007; 24:279–283.

27. Hanahan D, Weinberg RA. Hallmarks of cancer: the next generation. Cell. 2011; 144:646–674.

28. Gonzalez DM, Medici D. Signaling mechanisms of the epithelial-mesenchymal transition. Sci Signal. 2014; 7:8–24.

29. Thiery JP, Acloque H, Huang RY, Nieto MA. Epithelial-mesenchymal transitions in development and disease. Cell. 2009; 139:871–890.

30. Cano A, Perez-Moreno MA, Rodrigo I, Locascio A, Blanco MJ, del Barrio MG, Portillo F, Nieto MA. The transcription factor snail controls epithelial-mesenchymal transitions by repressing E-cadherin expression. Nat Cell Biol. 2000; 2:76–83.

31. Wu Y, Deng J, Rychahou PG, Qiu S, Evers BM, Zhou BP. Stabilization of snail by NF-kappaB is required for inflammation-induced cell migration and invasion. Cancer Cell. 2009; 15:416–428.

32. Cope GA, Deshaies RJ. COP9 signalosome: a multifunctional regulator of SCF and other cullin-based ubiquitin ligases. Cell. 2003; 114:663–671.

33. DeBerardinis RJ, Lum JJ, Hatzivassiliou G, Thompson CB. The biology of cancer: metabolic reprogramming fuels cell growth and proliferation. Cell Metab. 2008; 7:11–20.

34. Deshpande A, Sicinski P, Hinds PW. Cyclins and cdks in development and cancer: a perspective. Oncogene. 2005; 24:2909–2915.

35. Saucedo-Cuevas LP, Ruppen I, Ximenez-Embun P, Domingo S, Gayarre J, Munoz J, Silva JM, Garcia MJ, Benitez J. CUL4A contributes to the biology of basal-like breast tumors through modulation of cell growth and antitumor immune response. Oncotarget. 2014; 5:2330–2343. doi: 10.18632/oncotarget.1915.

36. Ji Q, Hu H, Yang F, Yuan J, Yang Y, Jiang L, Qian Y, Jiang B, Zou Y, Wang Y, Shao C, Gong Y. CRL4B interacts with and coordinates the SIN3A-HDAC complex to repress CDKN1A and drive cell cycle progression. J Cell Sci. 2014; 127:4679–4691.

37. Li W, Kang Y. A new Lnc in metastasis: long noncoding RNA mediates the prometastatic functions of TGF-beta. Cancer Cell. 2014; 25:557–559.

38. Tiwari N, Tiwari VK, Waldmeier L, Balwierz PJ, Arnold P, Pachkov M, Meyer-Schaller N, Schubeler D, van Nimwegen E, Christofori G. Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming. Cancer Cell. 2013; 23:768–783.

39. Thoms HC, Loveridge CJ, Simpson J, Clipson A, Reinhardt K, Dunlop MG, Stark LA. Nucleolar targeting of RelA(p65) is regulated by COMMD1-dependent ubiquitination. Cancer Res. 2010; 70:139–149.

40. Wang H, Wang X, Li Y, Liao A, Fu B, Pan H, Liu Z, Yang W. The proteasome inhibitor bortezomib reverses P-glycoprotein-mediated leukemia multi-drug resistance through the NF-kappaB pathway. Pharmazie. 2012; 67:187–192.

41. Zanotto-Filho A, Delgado-Canedo A, Schroder R, Becker M, Klamt F, Moreira JC. The pharmacological NFkappaB inhibitors BAY117082 and MG132 induce cell arrest and apoptosis in leukemia cells through ROS-mitochondria pathway activation. Cancer Lett. 2010; 288:192–203.

42. Bera A, Ghosh-Choudhury N, Dey N, Das F, Kasinath BS, Abboud HE, Choudhury GG. NFkappaB-mediated cyclin D1 expression by microRNA-21 influences renal cancer cell proliferation. Cell Signal. 2013; 25:2575–2586.

43. Chu D, Zhou Y, Zhang Z, Li Y, Li J, Zheng J, Zhang H, Zhao Q, Wang W, Wang R, Ji G. Notch1 expression, which is related to p65 Status, is an independent predictor of prognosis in colorectal cancer. Clin Cancer Res. 2011; 17:5686–5694.

44. Gewurz BE, Mar JC, Padi M, Zhao B, Shinners NP, Takasaki K, Bedoya E, Zou JY, Cahir-McFarland E, Quackenbush J, Kieff E. Canonical NF-kappaB activation is essential for Epstein-Barr virus latent membrane protein 1 TES2/CTAR2 gene regulation. J Virol. 2011; 85:6764–6773.

45. Bacolod MD, Barany F. Molecular profiling of colon tumors: the search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition. Ann Surg Oncol. 2011; 18:3694–3700.