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In vivo hematopoietic Myc activation directs a transcriptional signature in endothelial cells within the bone marrow microenvironment
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Katharina Franke1, Baiba Vilne2, Olivia Prazeres da Costa3, Martina Rudelius4, Christian Peschel1,5, Robert A.J. Oostendorp1 and Ulrich Keller1,5
1 III. Medical Department, Technische Universität München, Munich, Germany
2 German Heart Center Munich, Experiential Cardiology, Technische Universität München, Munich, Germany
3 Institute for Medical Microbiology, Immunology and Hygiene (MIH), Technische Universität München, Munich, Germany
4 Institute of Pathology, Universität Würzburg and Comprehensive Cancer Center Mainfranken, Germany
5 German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany
Ulrich Keller, email:
Keywords: Myc, leukemia, microenvironment, endothelial cells
Received: May 21, 2015 Accepted: July 26, 2015 Published: August 19, 2015
Cancer pathogenesis involves tumor-intrinsic genomic aberrations and tumor-cell extrinsic mechanisms such as failure of immunosurveillance and structural and functional changes in the microenvironment. Using Myc as a model oncogene we established a conditional mouse bone marrow transduction/transplantation model where the conditional activation of the oncoprotein Myc expressed in the hematopoietic system could be assessed for influencing the host microenvironment. Constitutive ectopic expression of Myc resulted in rapid onset of a lethal myeloproliferative disorder with a median survival of 21 days. In contrast, brief 4-day Myc activation by means of the estrogen receptor (ER) agonist tamoxifen did not result in gross changes in the percentage/frequency of hematopoietic lineages or hematopoietic stem/ progenitor cell (HSPC) subsets, nor did Myc activation significantly change the composition of the non-hematopoietic microenvironment defined by phenotyping for CD31, ALCAM, and Sca-1 expression. Transcriptome analysis of endothelial CD45- Ter119- cells from tamoxifen-treated MycER bone marrow graft recipients revealed a gene expression signature characterized by specific changes in the Rho subfamily pathway members, in the transcription-translation-machinery and in angiogenesis. In conclusion, intra-hematopoietic Myc activation results in significant transcriptome alterations that can be attributed to oncogene-induced signals from hematopoietic cells towards the microenvironment, e. g. endothelial cells, supporting the idea that even pre-leukemic HSPC highjack components of the niche which then could protect and support the cancer-initiating population.
Hematopoiesis involves a hierarchy of hematopoietic stem cells (HSC), hematopoietic progenitor cells (HPC), and mature blood cells. Regulation of the cell cycle plays a key role during steady state and challenged blood production and also serves as a checkpoint towards uncontrolled cell proliferation that might lead to blood malignancies. In addition, since the vast majority of HSC are in a quiescent state, the regulation of their entry into the G1 and S phase in response to demand is a crucial step in hematopoiesis. This checkpoint is frequently inactivated in blood cancers and contributes to uncontrolled proliferation of the malignant clone [1-3]. Self-renewal is, for a large part, regulated through extrinsic signals coming from the microenvironment, also termed niche, as a response to the specific requirements of the organisms. E. g., members of the wingless (Wnt) - frizzled (Fzd) pathway play an important role in the regulation of HSC self-renewal and differentiation. Wnt factors activate the canonical pathway through β- and γ-catenin, which in turn results in the up-regulation of target genes like Myc . Myc oncoproteins are members of a family of basic region/ helix-loop-helix/ leucine zipper transcription factors that regulate cell proliferation, differentiation, growth and apoptosis [5, 6]. About 15 % of all genes are regulated by Myc family members , and Myc proteins (c-Myc, N-Myc, and L-Myc) are overexpressed in at least 70 % of all aggressive human cancers [8, 9]. c-Myc (Myc) has been shown to play an essential role in regulating the balance between self-renewal and differentiation of HSCs, most probably by altering HSC-microenvironment interactions .
Tumors rely not only on genomic aberrations in the tumor cell population but also on an altered microenvironment. The dysregulation of this microenvironment has even been shown to induce a proliferative hematopoietic disorder [11-13]. Extrinsic signals from the microenvironment can, thus, promote malignant transformation of hematopoietic cells. Vice versa, it is also conceivable that early genetic lesions that alone might not suffice to result in malignant transformation could promote shaping of a cancer-supportive niche. This niche might not only promote tumorigenesis, but also could protect and supports cancer cells from therapy .
The niche is composed of different cell types which reside in different localizations within the bone marrow (BM). HSCs have been shown to be in direct contact with nestin+ mesenchymal and glial cells , (N-cadherin+) osteoblasts (OBC, SNO) [16, 17], CXCL12-abundant reticular (CAR) cells , as well as sinusoidal endothelial cells (EC) , and endosteal arterioles . Within the niche the anatomical meshwork of these different cell types generates a hypoxic, calcium-rich environment which retains the balance between actively cycling and dormant HSC. Activated HSC are located to perivascular CAR and nestin+ cells near sinusoids. Together with sinusoidal ECs, these cells make up the so-called vascular niche. Multipotent progenitor cells (MPPs) can here enter the circulation [21, 22]. ECs and surrounding perivascular mesenchymal stromal cells (MSCs) promote HSC maintenance by direct contact, as well as by producing secreted factors, such as stromal-derived factor 1α (SDF-1α). Cancer stem cells (CSCs) resemble normal stem cells by occupying these niches and being regulated by the microenvironment to self-renew and differentiate . In addition, tumor cells impair the normal HSC homeostasis, which ultimately, may lead to depletion of normal hematopoiesis .
To identify genes and pathways within specific components of the BM microenvironment regulated by oncogenic activity, we chose an in vivo model with activatable Myc as a model oncoprotein. Here we show that the constitutive over-expression of Myc in the HSPC compartment results in a myeloproliferative disorder in mice. We further demonstrate that brief Myc activation results in specific transcriptional changes of the microenvironment ECs within the BM.
Myc overexpression induces a rapidly lethal myeloproliferative disease
Ectopic Myc expression was shown earlier to suffice to induce a myeloid disorder with features of myeloproliferation/ acute myeloid leukemia . We hypothesized that a Myc-driven hematopoietic cancer/ pre-cancer model could serve as a tool for investigating changes in the microenvironment that could be induced by the cancer cell-intrinsic oncoprotein. For this purpose we aimed to establish a Myc leukemia/ myeloproliferation model (Figure 1a). We infected BM cells from 5-FU treated donor mice with retrovirus encoding Myc under control of a constitutively active promoter (Myc-GFP) or with the empty vector control (GFP). The transplanted BM effectively reconstituted the hematopoietic system (data not shown). Transplantation of syngeneic recipient mice with Myc-GFP BM resulted in a rapid onset lethal leukemia/ myeloproliferation with a median latency of 21 days, while none of the GFP control mice died during the observation period (Figure 1b). The Myc-induced disease was characterized by massive leukocytosis, in particular monocyte and granulocyte elevation in the peripheral blood and in the BM (Figure 1c-1e). Furthermore, Myc-GFP mice showed massive splenomegaly (Figure 1f), caused by GFP+ cells expressing high levels of Myc (Figure 1g, 1h).
Thus, ectopic Myc expression in a retroviral BM transduction-transplantation model results in a rapid onset myeloproliferative disorder.
Figure 1: Myc overexpression induces a myeloproliferative disease in mice. a. Scheme of the transplantation model. The BM of the donor mice was mobilized with 5-FU 4 days before the extraction. BM cells were infected in vitro with GFP or Myc-GFP retrovirus. Irradiated recipient mice were transplanted i. v. with infected BM and analyzed after disease onset. b. Mice transplanted with Myc-GFP infected BM die earlier than the GFP controls. Survival curve of the indicated genotypes. c. WBC, lymphocytes, monocytes and granulocytes peripheral blood counts of Myc-GFP and GFP mice at onset of disease. Shown are means ± SEM. * indicates p < 0.05. d. Representative flow cytometry analysis of the peripheral blood for the indicated surface markers, gated on CD45+ and GFP+ cells. e. Quantification of monocytes, granulocytes, B and T cell frequency in the peripheral blood. Shown are means ± SEM. * indicates p < 0.05. f. Left: Representative images of spleens from a GFP control and a Myc GFP mouse. Right: quantification. Values are mean ± SEM. * indicates p < 0.05. g. Percent of GFP+ cells in spleens of the indicated genotypes at disease onset. h. Representative immunoblot for Myc expression in the indicated genotypes. Abbreviations: i.v., intravenous; BM, bone marrow; Tx, transplantation; WBC, white blood cell.
Stable hematopoietic engraftment in mice transplanted with conditional Myc BM
Severe changes in BM composition as evident in full-blown hematopoietic cancers with massive BM infiltration may hamper detecting subtle cell-cell interactions with the microenvironment. In order to circumvent such a scenario we aimed to establish a conditional Myc oncogene model and chose the MycER inducible system . Here, Myc is fused to the synthetic estrogen receptor. The MycER fusion protein is constitutively expressed but largely inactive due to its location within the cytosol by binding to heat shock proteins. Activation of Myc’s transcriptional activity is achieved by administration of tamoxifen, which results in Myc translocation into the nucleus . MycER-GFP (further referred to as MycER) chimeric mice were, again, generated using the retroviral transduction-transplantation model. Transplanted mice showed stable engraftment assessed in the peripheral blood (Figure 2a). MycER mice revealed lower peripheral blood counts compared to GFP controls, which may have been caused by some leakiness of the ER system, albeit within the normal range (Figure 2a). Importantly, there were no gross disturbances within the leukocyte subsets assessed by flow cytometry, neither in the peripheral blood (Figure 2b, 2c) nor in the BM (Figure 2d, 2e). Furthermore, histopathological analysis of BM section from MycER and GFP control mice revealed no major differences in cellularity (Figure 2f). In order to evaluate MycER expression we performed immunoblotting from spleen tissue, revealing the expected ectopic MycER expression (Figure 2g).
Our results thus indicate that the mice reconstituted with MycER-infected BM show stable engraftment without gross abnormalities and without evidence for myeloproliferation in the absence of tamoxifen.
Figure 2: Stable engraftment and phenotype of conditional MycER recipient mice. a. Peripheral blood counts of GFP (n = 5) and MycER (n = 16) recipient mice at the indicated time points after transplantation. Values are mean ± SEM. * indicates p < 0.05. b. Representative flow cytometry analysis for the indicated surface markers. Peripheral blood cells were gated for CD45 and GFP positivity. c. Quantification of the indicated peripheral blood cell types 100 days after BM transplantation. Values are mean ± SEM. * indicates p < 0.05. d. Representative flow cytometry analysis of the BM using the indicated surface markers. Cells were gated for CD45 and GFP positivity. e. Quantification of the monocytes, granulocytes, B and T cells in the BM 100 days after transplantation. Values are mean ± SEM. * indicates p < 0.05. f. BM sections of GFP and MycER mice using H&E staining. g. A representative immunoblot for Myc expression in spleen 100 days after transplantation. Abbreviations: 5-FU, 5-Fluoruracil; WBC, white blood cell; PLT, platelets; RBC, red blood cell; BM, bone marrow.
In vivo Myc activation results in Myc target gene transcription and EC reduction
To test MycER activation in vivo, nine weeks after transplantation and after a stable reconstitution of high level GFP+ hematopoiesis (Figure 3a), MycER mice were treated with tamoxifen (Tam) or carrier (peanut oil, PO) for four days. Analysis of B220+ purified splenic B cells by flow cytometry revealed GFP positivity of 80 % of B cells (Figure 3b). In these cells transcripts for the established Myc target genes ornithin decarboxylase (Odc) and carbamoyl-phosphate synthetase 2 (Cad) [28, 29] was significantly induced (Figure 3c). Evaluation of the effects of Myc activation on hematopoiesis did not show alterations in peripheral blood cell numbers or in the composition of the leukocyte subgroups (Figure 3d, 3e). Furthermore, we did not find significant alterations in the composition of hematopoietic stem or progenitor subsets upon Tam vs. carrier only treatment (Figure 3f, 3g). In particular, brief Myc activation did not result in leukemic myeloproliferation or in an overt block of the maintenance of HSC or an expansion of MPP that has been reported for prolonged Myc overexpression, although histologically a slight myeloproliferation in the BM could be observed .
Figure 3: Conditional Myc activation results in target gene expression in vivo. a. Flow cytometry of peripheral blood. Shown is the percentage of GFP+ leukocytes nine weeks after transplantation of BM of the indicated genotype. Values are mean ± SEM. * indicates p < 0.05. b. Percent of GFP+ B cells in the spleen of MycER mice treated with tamoxifen (Tam, n = 7) or carrier only (PO, n = 8) for 4 days as assessed by flow cytometry. c. B220+ splenic B cells isolated from MycER mice treated with PO or with Tam were assessed for expression of the indicated transcripts. Shown is the relative expression as compared to GFP control transplanted mice. Values are mean ± SEM. * indicates p < 0.05. d. WBC numbers in the peripheral blood of MycER mice treated with PO (n = 6) or Tam (n = 8) for 4 days. Values are mean ± SEM. e. Flow cytometry quantification of the indicated cell types in peripheral blood after the MycER activation. d0: before treatment; d4: after 4 days Tam or PO treatment. Values are mean ± SEM. f. Frequency of HSPC subpopulations LSK and MPP in the BM of PO (n = 10) or Tam (n = 12) treated MycER mice. Values are mean ± SEM. g. Shown are representative flow cytometry dot plots of BM cells stained for lineage markers (Ter-119, CD11b, B220, Gr-1 and CD3e), c-kit and Sca-1. Abbreviations: Tam, tamoxifen; PO, peanut oil; Odc; ornithin decarboxylase; Cad, carbamoyl-phosphate synthetase 2; WBC, white blood cells; HSPC, hematopoietic stem/progenitor cells; LSK, Lin−Sca-1+c-Kit+; MPP, multipotent progenitor Lin−Sca-1-c-Kit+; BM, bone marrow.
We next aimed to identify oncoprotein-regulated genes in a pre-leukemic microenvironment in the BM of the established MycER in vivo model. For this purpose, since Tam treatment most likely resembles an early pre-leukemic state, we chose to study the vascular compartment which is an immediate compartment to come into contact with the MycER hematopoietic cells. In order to particularly study the sinusoidal compartment, we isolated non-hematopoietic BM cells as the CD45- Ter119- GFP- population from flushed BM without collagenase treatment of adjacent endosteal compartments. Using staining with CD31 (PECAM-1), ALCAM (CD166) and Sca-1, we distinguished endothelial cells (ECs), OBCs and MSCs (Figure 4a) . The most abundant population was the CD31+ ALCAM- Sca-1- EC population. In the flushed marrows, the CD31- ALCAM+ Sca-1- OBC population and ALCAM- Sca-1+ population containing MSCs  represented the least abundant subpopulations. No significant differences between the GFP control mice and the MycER mice treated with PO or Tam could be detected with regard to OBC and MSC. The CD31+ ECs were significantly more abundant in the GFP control mice compared to MycER/Tam mice (Figure 4b). This EC reduction was a persistent event which could also be seen in moribund Myc-GFP and long-term Tam treated MycER mice (Figure 4c, 4d).
Collectively our data show that a brief activation of hematopoietic MycER results in the activation of Myc target genes but not in tangible alterations in the hematopoietic compartment or in the compartment of MSC and OBC, but showed a reduction of the EC compartment.
Figure 4: Analysis of the BM microenvironment. a. Representative flow cytometric analysis of the BM microenvironmental cells nine weeks after transplantation. b. Composition of the BM microenvironment: ALCAM+ Sca-1- (OBC), ALCAM- Sca-1+ (MSC) and CD31+ (EC) populations. The graphs represent the mean ± SEM. * indicates p < 0.05. (c, d) BM sections of the indicated genotypes and conditions (MycER Tam long indicates tamoxifen treatment until onset of disease; n = 3 each) were analyzed for CD31+ cells using immunohistochemistry in three different 200x high power fields. c. Mean cell number per 200x high power field ± SEM. * indicates statistically significant differences (p < 0.05). d. Representative images of the indicated genotypes and conditions. White bars: 20µm. e. Representative flow cytometry sorting of CD45- Ter119- GFP- cells for transcriptome analysis. f. Total cell number (GFP- CD45- Ter119-) obtained after sorting of 6.7 x 105 cells from the three indicated recipient groups. Values are mean ± SEM. Abbreviations: FS, forward scatter; SS, side scatter; Tam, tamoxifen; PO, peanut oil; MSC, mesenchymal stromal cells; OBC, osteoblast cells; BM, bone marrow.
Myc directs transcriptional changes in EC of the BM environment
To determine how MycER cells from Tam treated mice (Figure 3c) affect ECs (GFP- CD31+ CD45- Ter119-) as compared to PO control mice, we sorted ECs (Figure 4a-4f), and performed transcriptome analysis. Genes that were significant (p < 0.05) differentially (log2 fold change (FC) ≥ 1.0 or ≤ -1.0) expressed (DEGs) in ECs of MycER mice treated with Tam or PO are shown in Figure 5a (see also supplemental Table S1 and Table S2). Thirty four of these differently expressed Myc-regulated genes were up-regulated in the Tam treated cohort, while 194 genes were down-regulated. Hierarchical clustering of these DEGs showed clear separation of the PO- and TAM-treated MycER animals (Figure 5a). In enrichment analyses performed to highlight the over-represented categories in pathways  (Figure 5b, supplemental Table S3), the DEGs revealed that Myc activation (MycER cells, Tam-treated) up-regulates hypoxia signaling and glucose metabolism (Figure 5c, Table S3, ordered by significance level), while down-regulating VEGFR, calcium clearance, small GTPase RhoB signaling pathways (Figure 5d). These analyses further revealed that transcription-translation processes, the histone demethylation machinery, and angiogenesis were significantly regulated in the endothelial compartment. Network analysis revealed protein interactions between the DEGs with prominent up-regulated number of connections to Eno1 and Pgk1, and down-regulated connections to Csnk2a2 and polycomb complex genes (Figure 5c, 5d, respectively).
Figure 5: Myc directs transcriptional changes in EC within the BM microenvironment. a. Heatmap image of genes that are significant (p < 0.05) differentially (log2 fold change (FC) ≥ 1.0 or ≤ -1.0) expressed (DEGs) in the non-hematopoietic EC BM cells of MycER mice treated with PO versus Tam. Highlighted are the 21 most regulated genes. For a complete list of analyzed genes, see supplemental Tables S1 and S2. b. Pathway enrichment of the DEGs (Tables S1 and S2), c. Network of the up-regulated DEGs: protein-protein interaction (PPI) information was visualized using the “induced networks module” tool from the ConsensusPathDB database ( ) using only high-confidence binary interactions and an intermediate nodes z-score threshold of 10. d. Similar network analysis, but now showing down-regulated DEGs, using an intermediate nodes z-score threshold of 40.
It is well-established that cancers rely not only on genetic disorders within the tumor cell population but also on changes in the microenvironment of the tumor. To find regulated genes in the microenvironment of an in vivo model we chose Myc as a model oncogene which could be conditionally expressed in HSPCs. The permanent overexpression of Myc resulted in the rapid onset of a myeloproliferative disease in mice with splenomegaly. We demonstrated that the mice transplanted with conditional MycER-infected BM showed a stable engraftment without significant changes in comparison to the GFP control mice. Also no evidence for leukemic myeloproliferation could be seen in the MycER mice demonstrating that the system was to a larger extent leaky.
The study of pre-leukemic/ pre-cancerous changes is challenging. The conditional MycER model allows for brief activation of Myc which results in transcription of the reported Myc target genes Odc and Cad. Importantly, after brief Myc activation overt myeloproliferation was not detectable. Others have shown that the overexpression of Myc in the HSPC compartment results in a block of HSC self-renewal and an expansion of the MPP , which we also did not observe in the MycER mice treated with Tam or carrier solution. Prolonged Tam treatment induced apoptosis in the MPP compartment and enhanced proliferation in the HSC . The four day treatment with Tam we performed had however no significant effect on these HSPC populations. Thus, brief conditional activation of Myc does not alter the hematopoietic system in the BM, which renders this model suitable to study pre-leukemic changes of the BM microenvironment without disturbing effects caused by malignant transformations.
To study oncoprotein-induced changes within the BM microenvironment we more closely investigated the EC-enriched CD45- Ter119- GFP- non-hematopoietic host population. Our experiments revealed that MycER Tam-activated hematopoietic cells reduced the number of ECs in the BM. ECs play multiple roles within the BM. They secrete SDF-1α (CXCL12), which restrains the HSPCs in the BM microenvironment through the CXCR4-CXCL12 signaling pathway [21-23]. Secondly, the fenestrated endothelium allows HPCs to enter the blood stream and vice versa. In addition, the sinusoidal endothelial compartment and its surrounding Lepr+ nestindim NG2- perivascular cells have been shown to maintain actively cycling HSCs through secretion of stem cell factor (SCF) . More quiescent HSCs are located closer to ECs surrounded by Nestin+ NG2+ cells . The reduction of EC in pre-leukemic mice may be a first change leading to a hijacked microenvironment, i.e. a tumor cell-driven environment supporting survival and proliferation of tumor cells . Our observations indicate that pre-malignant cells transform the BM microenvironment very early during leukemogenesis. Pathway enrichment analysis of the DEGs showed that several different pathways are involved in those early changes in the transcriptome of ECs. In particular the Rho subfamily pathways, the transcription-translation machinery, the angiogenesis, and oxygen homeostasis pathways are affected by the presence of Mychigh cells. Although increased angiogenesis is a hallmark of cancer , the early pre-leukemic changes are characterized by reduced number of EC, reduced VEGFR1, and -2 signaling, and increased expression of the HIF-1α target genes Pgk1- and Eno1 by CD31+ CD45- Ter119- cells. As VEGFR signaling induces proliferation, survival and migration of EC [36, 37], it is likely that inhibition of this pathway also results in a reduced proliferation or increased apoptosis. In addition to these pathways, the decreased expression of the RhoGEF Arhgef12 (also known as LARG), Rac2, Rhob, and its effector Diaph1, which are involved in stress fiber formation and cellular movement [38, 39], vascular trafficking , transcriptional dynamics and cell cycle , suggests that pre-leukemic Mychigh cells also affect remodeling of the vascular network. Regulation of these early events in leukemic transformation by conditional expression of Myc reveals one crucial point of action, i. e. how evolving cancer cells not only reprogram mesenchymal but also endothelial niche cells.
In summary, our data generated in an in vivo conditional oncogene model hint towards pre-leukemic steps in remodeling BM EC numbers, movement and response to hypoxia. Our analyses thus provide evidence for involvement of BM ECs in early pre-leukemic changes in the niche, and provide a rationale for further investigating endothelial targets for niche-directed therapies.
Materials and Methods
Mice were kept in microisolators under SPF conditions according to FELASA recommendations. All animal experiments were performed in accordance with FELASA guidelines and the regional animal ethics committee approvals. C57Bl6/J mice were received from Janvier Labs (France).
Bone marrow infection and transplantation
Recipient mice were lethally irradiated with 8.5 Gy and received donor cells via the tail vein on the next day, as described previously . After 9 weeks, mice were sacrificed, and BM, spleen, and blood cells were analyzed.
To generate MycER expressing cells, retrovirus was obtained through transfection of 293-derived ΦNX Eco cells with MSCV-IRES-MycER-GFP  using lipofectamine 2000 (Invitrogen, Karlsruhe, Germany). To facilitate transfection of cells, donor mice were pretreated with 150 mg/kg 5-FU (medac, Wedel, Germany) four days prior infection . Transfected donor cells were injected i.v. in lethally irradiated recipient mice. Four weeks after transplantation, each recipient was bled and tested for level of engraftment.
To induce the MycER activation, tamoxifen (Sigma-Aldrich, Taufkirchen, Germany) was dissolved in peanut oil (Sigma-Aldrich, Taufkirchen, Germany) and administered by daily intraperitoneal (IP) injection for four days at a dose of 1 mg/20g/mouse per day. For long-term treatment with tamoxifen mice received a special diet containing 400 mg/kg tamoxifen (Ssniff, Soest, Germany). Since Myc activation is not equally efficient in every single mouse, overexpression of c-Myc and the activation of the target genes Odc and Cad was assessed in all recipient mice. Only mice showing a robust activation of Myc expression with accompanied increase in Odc and Cad were used as Myc+ recipient mice in our analyses.
Flow cytometry and cell isolation
Cell suspensions were stained with antibodies for surface antigens anti-Ly-6G (Gr-1)-PE (clone RB6-8C5), anti-CD4-PE-Cy5 (clone GK1.5), anti-CD8a-PE-Cy5 (clone 53-6.7), anti-CD11b-APC-eFluor780 (clone M1/70), anti-CD45R (B220)-PE-Cy7 (clone RA3-6B2), anti-CD45-eFluor450 (clone 30-F11), anti-CD166 (ALCAM)-PE (clone eBio ALC48), anti-Ter-119-eFluor450 (clone TER-119), anti-CD31 (PECAM-1)-APC (clone 390), anti-CD117 (c-Kit)-PE (clone 2B8) and anti-Ly-6A (Sca-1)-PE-Cy7 (clone D7) in 1 x PBS (PAA, Cölbe, Germany), 0.5 % BSA (Roth, Karlsruhe, Germany) buffer for 15 min on ice in the dark. All antibodies are from eBioscience (Frankfurt, Germany). Cells viability was assessed by Propidium iodide (PI) stain (BioLegend, London, United Kingdom). FACS analysis was performed on a CyAn ADP Lx 9 (Beckman Coulter, Krefeld, Germany) flow cytometer. FACS data were analyzed using the FlowJo software (TreeStar Inc).
Isolation of B cells from spleen was achieved by labeling the B cells with an antibody against B220 (CD45R) conjugated to MicroBeads (Miltenyi Biotec, Tokyo, Japan). The not magnetically labeled non-B cells were depleted by retaining them on a MACS® Column (LS column, Miltenyi, Tokyo, Japan) in the magnetic field of a MACS Separator, while the labeled B cells bind the column.
Tissue and organ samples and cell sorting
Blood samples were collected into 1.2 ml heparinized tubes (Sarstedt AG, Nümbrecht, Germany). Blood cells were counted on a Scil Vet ABC (ScilAnimal Care, Viernheim, Germany). BM cells were flushed from femurs and tibias with HF2+ buffer (Hank’s balanced salt solution, supplemented with 2 % FCS, 10 mM HEPES buffer and antibiotics, Invitrogen, Karlsruhe, Germany). Spleens were passed through 70 µm nylon Cell Strainer (BD Biosciences, Heidelberg, Germany). Viable cells were counted using Trypan Blue (Invitrogen, Karlsruhe, Germany) in a Neubauer hemocytometer.
Cell population of the BM were sorted on the MoFlo Legacy 14 color cell sorter (Beckman Coulter, Krefeld, Germany) supplied with Summit 4.3 software (Beckman Coulter). Cell suspensions were stained with antibodies for surface antigens anti-Ter-119-eFluor450 (clone TER-119) and anti-CD45-APC-eFluor780 (clone 30-F11) in 1 x PBS (PAA, Cölbe, Germany), 0.5 % BSA (Roth, Karlsruhe, Germany) buffer for 15 min on ice in the dark. All antibodies are from eBioscience (Frankfurt, Germany). Gated was for the Ter-119 negative, CD45 negative and GFP negative population.
Real-time PCR and gene expression analysis
Copy-DNA (cDNA) from mouse samples and cultured cells was reverse transcribed using the Omniscript® RT Kit on mRNA isolated with the RNeasy® Mini Kit (both from Qiagen, Hilden, Germany). Real-time PCR was performed using Platinum SYBR-Green Q PCR SuperMix-UDG (Invitrogen, Karlsruhe, Germany) on ABI Prism 7700 (Applied Biosystems, Wien, Austria). Data analysis was done by comparing Ct values with a control sample set as 1 and normalized to the expression of ubi (ubiquitin). Sequences for primers are available upon request.
Protein extracts (30 μg per lane) were electrophoretically separated on a SDS-PAGE gel, transferred to PVDF-membranes (Millipore, Darmstadt, Germany) and blotted with antibodies specific for c-Myc (Santa Cruz Biotechnology, Heidelberg, Germany) and β-Actin (Sigma-Aldrich, Taufkirchen, Germany).
Histology and immunohistochemistry
Bones were obtained from the GFP and MycER mice. Slides of 5- to 6-μm sections cut from formalin-fixed, paraffin-embedded tissues were deparaffinized and stained with hematoxylin and eosin (Dako, Jena, Germany), dehydrated, and then covered with a coverslip. For immunohistochemistry 2-μm sections were deparaffinized. Antigen retrieval was performed by pressure cooking in citrate buffer (pH = 6) for 7 minutes. Primary CD31 antibody (DAKO; diluation 1:80) was incubated overnight at 4°C. Antibody detection was performed using the DAKO REAL detection kit (DAKO) accoding to the manufacturer’s instructions. High-power fields (200x) of n = 3 samples of the indicated genotypes and conditions were analyzed.
Gene expression profiling was performed on Affymetrix Mouse Gene ST 1.0 high-density oligonucleotide arrays. Total cellular RNA was isolated from sorted cells using RNA isolation kit (RNeasy® Mini Kit; Qiagen, Hilden, Germany), and further on labeled, fragmented, and hybridized to the arrays using the WT Expression Kit (Affymetrix). Raw data analysis was performed with R and Bioconductor . Arrays were assessed for quality and RMA-normalized.
For two-way comparisons, the limma  t-statistic approach with Benjamini-Hochberg multiple testing correction  was used to select the differentially expressed genes (DEGs) from the RMA-normalized gene expression data. Genes were defined as differentially expressed if they had a -1 ≥ log2FC ≥ 1 and nominal P ≤ 0.05 (not corrected for multiple testing) between the two conditions being compared. Hierarchical clustering of the differentially expressed genes (DEG) and visualization of the resulting heatmap was done using R heatmap.2 function from the gplots package .
Biochemical Pathway information was collected from ConsensusPathDB 31] which is an integrative database currently containing 4,601 Biochemical Pathways in Homo sapiens from 32 public resources such as KEGG , Reactome , Wikipathways  and NetPath . We first collected all Pathways associated with each of the differentially expressed genes (DEGs; -1 ≥ log2FC ≥ 1 and P ≤ 0.05, not corrected for multiple testing) genes and performed enrichment analysis to highlight the over-represented categories. Fisher’s exact test as implemented in R was used to calculate the statistical significance of the overlaps, thereafter the false discovery rate (FDR) was controlled using the Benjamini-Hochberg (BH) procedure ., [
Protein-protein interaction (PPI) information was taken from ConsensusPathDB
,  which is an integrative interaction database currently containing 215,541 unique interactions from 32 public resources such as IntAct , BioGrid  HPRD  and CORUM . ConsensusPathDB was searched for direct interactions between the differentially expressed genes (DEGs; -1 ≥ log2FC ≥ 1 and P ≤ 0.05, not corrected for multiple testing). Network visualization was performed using the induced network modules in the gene set analysis tool of ConsensusPathDB
Statistical analyses were performed using the statistical functions of Excel (Microsoft, Hamburg, Germany) and GraphPad Prism (GraphPad Software, San Diego, California, USA). The bars shown represent the standard error of the mean (SEM). T-tests were used to analyze statistical differences between two groups. When comparing ≥ 3 groups, ANOVA testing was used to determine significant differences. Only P values < 0.05 were considered statistically significant.
We thank Stephanie Schöffmann and Kerstin Behnke for excellent technical support, and the Flow Cytometry Core Facility and the Zentrum Präklinische Forschung (TU München) for expert assistance in cell sorting and animal care. This work was supported by the José Carreras Leukemia Foundation (DJCLS; grants R11/12 and R11/18) and the Deutsche Forschungsgemeinschaft (DFG; grants KE 222/7-1, OO 8/5, 8/9, and FOR2033).
Conflicts of interest
The authors declare no conflicts of interest.
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