Oncotarget

Research Papers:

Identification of polycystic ovary syndrome potential drug targets based on pathobiological similarity in the protein-protein interaction network

Hao Huang, Yuehan He, Wan Li, Wenqing Wei, Yiran Li, Ruiqiang Xie, Shanshan Guo, Yahui Wang, Jing Jiang, Binbin Chen, Junjie Lv, Nana Zhang, Lina Chen and Weiming He _

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Oncotarget. 2016; 7:37906-37919. https://doi.org/10.18632/oncotarget.9353

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Abstract

Hao Huang1,*, Yuehan He1,*, Wan Li1, Wenqing Wei1, Yiran Li1, Ruiqiang Xie1, Shanshan Guo1, Yahui Wang1, Jing Jiang1, Binbin Chen1, Junjie Lv1, Nana Zhang2, Lina Chen1, Weiming He3

1College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, Heilongjiang Province, China

2Department of Endocrinology and Metabolism Laboratory, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang Province, China

3Institute of Opto-electronics, Harbin Institute of Technology, Harbin, Heilongjiang Province, China

*These authors have contributed equally to this work

Correspondence to:

Lina Chen, email: [email protected]

Weiming He, email: [email protected]

Keywords: polycystic ovary syndrome, protein-protein interaction network, pathobiological similarity, module, drug target

Received: January 04, 2016     Accepted: April 28, 2016     Published: May 13, 2016

ABSTRACT

Polycystic ovary syndrome (PCOS) is one of the most common endocrinological disorders in reproductive aged women. PCOS and Type 2 Diabetes (T2D) are closely linked in multiple levels and possess high pathobiological similarity. Here, we put forward a new computational approach based on the pathobiological similarity to identify PCOS potential drug target modules (PPDT-Modules) and PCOS potential drug targets in the protein-protein interaction network (PPIN). From the systems level and biological background, 1 PPDT-Module and 22 PCOS potential drug targets were identified, 21 of which were verified by literatures to be associated with the pathogenesis of PCOS. 42 drugs targeting to 13 PCOS potential drug targets were investigated experimentally or clinically for PCOS. Evaluated by independent datasets, the whole PPDT-Module and 22 PCOS potential drug targets could not only reveal the drug response, but also distinguish the statuses between normal and disease. Our identified PPDT-Module and PCOS potential drug targets would shed light on the treatment of PCOS. And our approach would provide valuable insights to research on the pathogenesis and drug response of other diseases.


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