Oncotarget

Research Papers:

Kinomic profiling identifies focal adhesion kinase 1 as a therapeutic target in advanced clear cell renal cell carcinoma

Arindam P. Ghosh, Christopher D. Willey, Joshua C. Anderson, Karim Welaya, Dongquan Chen, Amitkumar Mehta, Pooja Ghatalia, Ankit Madan, Gurudatta Naik, Sunil Sudarshan and Guru Sonpavde _

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Oncotarget. 2017; 8:29220-29232. https://doi.org/10.18632/oncotarget.16352

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Abstract

Arindam P. Ghosh5,*, Christopher D. Willey1,*, Joshua C. Anderson1, Karim Welaya1, Dongquan Chen2, Amitkumar Mehta3, Pooja Ghatalia4, Ankit Madan3, Gurudatta Naik3, Sunil Sudarshan5,6, Guru Sonpavde3

1Department of Radiation Oncology, University of Alabama Birmingham (UAB) Medical Center, Birmingham, Alabama, USA

2Department of Biostatistics, UAB Medical Center, Birmingham, Alabama, USA

3Department of Medicine, Section of Hematology-Oncology, UAB Medical Center, Birmingham, Alabama, USA

4Department of Medicine, UAB Medical Center, Birmingham, Alabama, USA

5Department of Urology, UAB Medical Center, Birmingham, Alabama, USA

6Birmingham VA Medical Center, Birmingham, Alabama, USA

*These authors have contributed equally to this work

Correspondence to:

Guru Sonpavde, email: gsonpavde@uabmc.edu

Sunil Sudarshan, email: ssudarshan@uabmc.edu

Keywords: clear cell renal cell carcinoma, kinomics, focal adhesion kinase, metastasis, therapeutic validation

Received: November 17, 2016     Accepted: February 07, 2017     Published: March 18, 2017

ABSTRACT

The introduction of targeted therapies has caused a paradigm shift in the treatment of metastatic clear cell (cc)-renal cell carcinoma (RCC). We hypothesized that determining differential kinase activity between primary and metastatic tumor sites may identify critical drivers of progression and relevant therapeutic targets in metastatic disease. Kinomic profiling was performed on primary tumor and metastatic tumor deposits utilizing a peptide substrate microarray to detect relative tyrosine phosphorylation activity. Pharmacologic and genetic loss of function experiments were used to assess the biologic significance of the top scoring kinase on in vitro and in vivo tumor phenotypes. Kinomics identified 7 peptides with increased tyrosine phosphorylation in metastases that were significantly altered (p<0.005). Based on these peptides, bioinformatics analyses identified several candidate kinases activated in metastases compared to primary tumors. The highest ranked upstream kinase was Focal Adhesion Kinase 1 (FAK1). RCC lines demonstrate evidence of elevated FAK1 activation relative to non-transformed renal epithelial cells. Pharmacologic inhibition of FAK1 with GSK2256098 suppresses in vitro tumor phenotypes. In turn, FAK1 knockdown in RCC cells suppresses both in vitro phenotypes and in vivo tumor growth. Collectively, these data demonstrate functional activation of FAK1 in metastases and provide preclinical rationale for targeting this kinase in the setting of advanced ccRCC.


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