Oncotarget

Research Papers:

Genotoxic stress inhibits Ewing sarcoma cell growth by modulating alternative pre-mRNA processing of the RNA helicase DHX9

Marco Fidaleo _, Francesca Svetoni, Elisabetta Volpe, Belén Miñana, Daniela Caporossi and Maria Paola Paronetto

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Oncotarget. 2015; 6:31740-31757. https://doi.org/10.18632/oncotarget.5033

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Abstract

Marco Fidaleo1,2,*, Francesca Svetoni1,2,*, Elisabetta Volpe2, Belén Miñana3,4, Daniela Caporossi1, Maria Paola Paronetto1,2

1Department of Movement, Human and Health Sciences, University of Rome “Foro Italico”, Rome, Italy

2Laboratories of Cellular and Molecular Neurobiology and of Neuroimmunology, CERC, Fondazione Santa Lucia, Rome, Italy

3Centre de Regulació Genòmica, Barcelona, Spain

4Universitat Pompeu Fabra, Barcelona, Spain

*These authors have contributed equally to this work

Correspondence to:

Maria Paola Paronetto, e-mail: mariapaola.paronetto@uniroma4.it

Keywords: Ewing sarcoma, alternative splicing, DNA damage, DHX9

Received: April 13, 2015     Accepted: September 21, 2015     Published: October 02, 2015

ABSTRACT

Alternative splicing plays a key role in the DNA damage response and in cancer. Ewing Sarcomas (ES) are aggressive tumors caused by different chromosomal translocations that yield in-frame fusion proteins driving transformation. RNA profiling reveals genes differentially regulated by UV light irradiation in two ES cell lines exhibiting different sensitivity to genotoxic stress. In particular, irradiation induces a new isoform of the RNA helicase DHX9 in the more sensitive SK-N-MC cells, which is targeted to nonsense-mediated decay (NMD), causing its downregulation. DHX9 protein forms a complex with RNA polymerase II (RNAPII) and EWS-FLI1 to enhance transcription. Silencing of DHX9 in ES cells sensitizes them to UV treatment and impairs recruitment of EWS-FLI1 to target genes, whereas DHX9 overexpression protects ES cells from genotoxic stress. Mechanistically, we found that UV light irradiation leads to enhanced phosphorylation and decreased processivity of RNAPII in SK-N-MC cells, which in turn causes inclusion of DHX9 exon 6A. A similar effect on DHX9 splicing was also elicited by treatment with the chemotherapeutic drug etoposide, indicating a more general mechanism of regulation in response to DNA damage. Our data identify a new NMD-linked splicing event in DHX9 with impact on EWS-FLI1 oncogenic activity and ES cell viability.


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