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Tumor biomarker conversion between primary and metastatic breast cancer: mRNA assessment and its concordance with immunohistochemistry

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Oncotarget. 2017; 8:51416-51428. https://doi.org/10.18632/oncotarget.18006

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Stefan Stefanovic, Ralph Wirtz, Thomas M. Deutsch, Andreas Hartkopf, Peter Sinn, Zsuzsanna Varga, Bettina Sobottka, Lakis Sotiris, Florin-Andrei Taran, Christoph Domschke, Andre Hennigs, Sara Y. Brucker, Christof Sohn, Florian Schuetz, Andreas Schneeweiss and Markus Wallwiener _


Stefan Stefanovic1,2,*, Ralph Wirtz3,*, Thomas M. Deutsch2, Andreas Hartkopf4, Peter Sinn5, Zsuzsanna Varga6, Bettina Sobottka6, Lakis Sotiris3, Florin-Andrei Taran4, Christoph Domschke1,2, Andre Hennigs1,2, Sara Y. Brucker7, Christof Sohn1,2, Florian Schuetz1,2, Andreas Schneeweiss1,2 and Markus Wallwiener1,2

1Department of Gynecology and Obstetrics, Heidelberg University Hospital, 69120 Heidelberg, Germany

2National Center for Tumor Diseases (NCT) Heidelberg, 69120 Heidelberg, Germany

3Stratifyer Molecular Pathology GmbH, 50935 Cologne, Germany

4Department of Women’s Health, University Hospital Tübingen, 72076 Tübingen, Germany

5Department of Pathology, Heidelberg University Hospital, 69120 Heidelberg, Germany

6Institute of Surgical Pathology, Zurich University Hospital, 8091 Zurich, Switzerland

7Research Institute for Women’s Health, Tübingen University Hospital, 72076 Tübingen, Germany

*These authors contributed equally to this work

Correspondence to:

Markus Wallwiener, email: markus.wallwiener@med.uni-heidelberg.de

Keywords: breast cancer, tumor biomarkers, receptor conversion, immunohistochemistry, real-time quantitative polymerase chain reaction

Received: February 15, 2017     Accepted: May 05, 2017     Published: May 19, 2017


Biomarker changes between primary (PT) and metastatic tumor (MT) site may be significant in individualizing treatment strategies and can result from actual clonal evolution, biomarker conversion, or technical limitations of diagnostic tests.

This study explored biomarker conversion during breast cancer (BC) progression in 67 patients with different tumor subtypes and metastatic sites via mRNA quantification and subsequently analyzed the concordance between real-time qPCR and immunohistochemistry (IHC). Immunostaining for estrogen receptor (ER), progesterone receptor (PR), HER2, and Ki-67 was performed on formalin-fixed, paraffin-embedded PT and MT tissue sections. RT-qPCR was performed using a multiplex RT-qPCR kit for ESR1, PGR, ERBB2, and MKI67 and the reference genes B2M and CALM2.

Subsequent measurement of tumor biomarker mRNA expression to detect conversion revealed significant decreases in ESR1 and PGR mRNA and MKI67 upregulation (all p < 0.001) in MT compared to PT of all tumor subtypes and ERBB2 upregulation in MT from triple-negative PT patients (p = 0.023). Furthermore, ERBB2 mRNA was upregulated in MT brain biopsies, particularly those from triple-negative PTs (p = 0.023). High concordance between RT-qPCR and IHC was observed for ER/ESR1 (81%(κ 0.51) in PT and 84%(κ 0.34) in MT, PR/PGR (70%(κ 0.10) in PT and 78% (κ −0.32) in MT), and for HER2/ERBB2 (100% in PT and 89% in MT). Discordance between mRNA biomarker assessments of PT and MT resulting from receptor conversion calls for dynamic monitoring of BC tumor biomarkers. Overall, RT-qPCR assessment of BC target genes and their mRNA expression is highly concordant with IHC protein analysis in both primary and metastatic tumor.

Tumor biomarker conversion between primary and metastatic breast cancer: mRNA assessment and its concordance with immunohistochemistry | Stefanovic | Oncotarget


Tremendous progress has been made in the treatment of metastatic breast cancer (MBC) in recent decades, but still very few therapies use patient or tumor-specific characteristics to tailor individualized treatment [1, 2]. Breast cancer (BC) is a disease with heterogeneous tumor biology, comprising divergent molecular subtypes [35]. In this context, one of the main challenges is to minimize overtreatment by developing precise patient selection criteria for targeted therapies by defining new biomarkers or real-time monitoring of tumor biology dynamics and minimal residual disease (MRD) [1, 6].

Clinical decision making in both primary and MBC is based on pathologic assessment of tumor biomarkers, preferably target genes or proteins acquired from primary tumor biopsy.

There is a growing body of evidence describing tumor biomarker conversion, i.e. upregulation or downregulation of hormone receptors, HER2/ERBB2 and Ki-67/MKI67 when comparing metastatic tumors (MT) with primary tumors (PT) [719]. The ability to capture tumor biomarker changes in the course of BC progression could have consequences for further diagnostic procedures, in the context of liquid biopsies [20, 21] or conventional rebiopsies [22, 23], as well as potential therapeutic implications, especially for trials aiming for an extended indication of HER2 targeted therapies. Conventional rebiopsies upon reaching the next stage of cancer progression are a suboptimal method due to their limited feasibility and invasiveness.

Identifying associations between immunophenotype and patterns of the metastatic spread of BC could help define surrogate markers to identify patients with a high risk for developing cerebral metastases based on tumor biomarker status at the time of primary diagnosis. Therefore, reliable and sensitive methods of quantifying changes in target tumor biomarker expression in the course of cancer progression are of utmost importance for optimizing treatment strategies in the metastatic situation.

Apart from substantial biomarker conversion at the mRNA/protein level or even clonal evolution as genetic alterations – mainly hotspot mutations [2429], another potential scenario behind the conversion of tumor biomarker is due to technical limitations of dichotomous biomarker assessment via conventional IHC. Exact quantification of the underlying target gene and protein expression could essentially facilitate exploration of tumor biomarker conversion upon disease progression, and therefore the present study used a highly standardized real-time quantitative polymerase chain reaction (RT-qPCR) kit to compare the expression levels of the ESR1, PGR, ERBB2, and MKI67 genes in matched pairs of BC PT and MT samples. In addition, matched results from conventional immunohistochemistry assessments of the same biomarkers were compared to address the concordance or discordance between the mRNA and protein assessments.

The study objective was to use mRNA quantification to explore biomarker conversion in different tumor subtypes and metastatic locations during breast cancer progression and to analyze the concordance between RT-qPCR and IHC in PT and MT samples.


Matched BC PT and MT samples were available from 67 patients. Median age at the time of primary BC diagnosis was 51.9 years. Median age at first diagnosis of metastatic disease was 56.9 years. As shown in Table 1, patients with the luminal subtype (hormone receptor positive, HER2 negative as assessed by IHC of the PT) comprised 62% of the total cohort.

Table 1: Clinicopathological patient characteristics

Patient characteristic

n (%)

Total, n


Median age at PT biopsy, years


Median age at MT biopsy, years


Phenotype of primary tumor by IHC, n (%)

 Luminal A

25 (37%)

 Luminal B (HER2-negative)

15 (22%)

 Luminal B (HER2-positive)

2 (3%)

 HER2 positive (non-luminal)

6 (9%)


17 (25%)


2 (3%)

Grading of primary tumor, n (%)



0 (0%)


40 (60%)


20 (30%)


7 (10%)

ER/ESR1 status of primary tumor, n (%)




44 (66%)

42 (63%)


23 (34%)

24 (36%)


0 (0%)

1 (2%)

PR/PGR status of primary tumor, n (%)


42 (63%)

29 (43%)


25 (37%)

37 (55%)


0 (0%)

1 (2%)

HER2/ERBB2 status of primary tumor, n (%)


14 (21%)

8 (12%)


39 (58%)

58 (87%)


14 (21%)

1 (2%)

Site of metastatic biopsy, n (%)


24 (36%)


19 (28%


8 (12%)


2 (3%)


3 (5%)

 Soft tissue

11 (16%)

This study initially compared the dynamics of tumor biomarkers in PTs vs. MTs by biopsy site using RT-qPCR. The mRNA assessment showed ESR1 downregulation in MT (compared to PT) samples from all biopsy sites, the difference being statistically significant in the brain (40−ΔΔCT p < 0.001). PGR was downregulated in MT (vs. PT) from all biopsy sites, the difference being significant in the brain (40−ΔΔCT p < 0.001), liver (40−ΔΔCT p = 0.004), and skin/soft tissue samples (40−ΔΔCT p = 0.006). MKI67 was upregulated in MT (vs. PT) in samples from all biopsy sites, the difference being significant in the brain (40−ΔΔCT p = 0.034), bone (40−ΔΔCT p < 0.001), and skin/soft tissue (40−ΔΔCT p = 0.018). Furthermore, a modest ERBB2 upregulation trend in MT (vs. PT) was recorded in patients with MT in biopsies from the brain (40−ΔΔCT p = 0.138) and bone (40−ΔΔCT p = 0.138), see Figure 1.

mRNA assessment of tumor biomarkers in metastatic tumor (MT) vs. primary (PT) tumor samples, by biopsy site.

Figure 1: mRNA assessment of tumor biomarkers in metastatic tumor (MT) vs. primary (PT) tumor samples, by biopsy site.

Subsequently, changes in tumor biomarker mRNA expression were measured in MT compared to the PT baseline for each phenotype. Significant decreases in ESR1 and PGR mRNA and upregulation of MKI67 (all p < 0.001) were observed in MT vs. PT of all phenotypes (Figure 2A). ERBB2 upregulation was significant in MT from triple-negative vs. non-triple-negative PT patients (p = 0.023, Mann–Whitney U Test), as shown in Figure 2B. An adjacent analysis focused on the dynamics of tumor biomarker mRNA expression by tumor subtype in MT vs. PT samples from particular metastatic sites.

Changes from PT baseline in the MT mRNA levels of tumor biomarkers, by tumor subtype.

Figure 2: Changes from PT baseline in the MT mRNA levels of tumor biomarkers, by tumor subtype. (A) 40−ΔΔ Cq; (B) Mann–Whitney test.

Brain metastasis

ESR1/PGR expression was significantly downregulated (p < 0.001) in brain MT biopsies for all tumor subtypes (compared to PT), while ERBB2 mRNA was upregulated in brain MT biopsies, particularly in triple-negative PTs (p = 0.023), as shown in Figure 3.

Changes from PT baseline in brain MT mRNA levels of tumor biomarkers, by tumor subtype.

Figure 3: Changes from PT baseline in brain MT mRNA levels of tumor biomarkers, by tumor subtype.

Bone metastasis

Accordingly, the study assessed the conversion of tumor biomarkers in MT vs. PT baseline by immunophenotype in bone-acquired biopsies using RT-qPCR. ESR1 and PGR expression levels were modestly downregulated in bone MT compared to PT biopsies for all immunophenotypes (p = 0.177 and p = 0.138, respectively), while ERBB2 mRNA was upregulated in bone MT biopsies, particularly in triple-negative PTs (p = 0.138), as shown in Figure 4.

Changes from PT baseline in bone MT mRNA levels of tumor biomarkers, by tumor subtype.

Figure 4: Changes from PT baseline in bone MT mRNA levels of tumor biomarkers, by tumor subtype.


For each biomarker, we calculated the concordance between the RT-qPCR result and the hormone and HER2 status as established by IHC and obtained from diagnostic pathology reports. High concordance between RT-qPCR and IHC assessments was observed for ER/ESR1: 81% (κ 0.51) in PT and 84% (κ 0.34) in MT; PR/PGR: 70% (κ 0.10) in PT and 78% (κ −0.32) in MT; and HER2/ERBB2: 100% in PT and 89% in MT, see Table 2. As regards the recognition of discordance in receptor conversion, three patients showed a change from ER-negative PT to ER-positive MT as assessed by RT-qPCR. These biopsies were obtained from one lung MT and two bone MTs. IHC showed that in four patients a “non-luminal” PT converted to a “luminal” MT exhibiting hormone receptor expression, while only one such case was observed with RT-qPCR.

Table 2: (A) Concordance calculation between RT-qPCR and IHC for the biomarkers studied, (B) Methodologic discrepancies in receptor conversion recognition

A) Concordance of RT-qPCR and IHC



Primary breast cancer (PT)

81% κ 0.51

70% κ 0.10

Metastatic breast cancer (MT)

84% κ 0.34

78% κ−0.32

B) Hormone receptor conversion




19 (20)*/55°

21 (22)*/53†

Both neg to both pos



Both pos to both neg



ER neg to pos/PR neg



ER neg to pos/PR pos



ER pos to neg/PR neg



ER pos to neg/PR pos



PR neg to pos/ER neg



PR neg to pos/ER pos



PR pos to neg/ER neg



PR pos to neg/ER pos


8 (9)*

*One patient had 2 MT biopsies for one PT, but only one MT biopsy showed a shift, thus the value including the shifting sample in brackets.

°RT-qPCR total comprises 55 patients as % tumor cells were insufficient for accurate statement of hormone receptor positivity/negativity in 11 MT and 1 PT.

†IHC total comprises 53 samples as immunohistochemistry was missing for 14 samples.


Biomarker conversion: ERBB2 overexpression in initially HER2 negative metastatic breast cancer

Recently, a growing body of evidence has emerged, confirming that a shift in hormone receptor status from positive in PT to negative in MT is associated with worse survival compared with consistent endocrine sensitivity. Hormone receptors have been shown to be independent prognostic factors for post-recurrence BC mortality in multivariate analyses at all stages of tumor progression [23, 3032]. Our analysis was able to confirm a tendency in biomarker conversion towards a more aggressive phenotype with significant downregulation of ESR1 and PGR in biopsies from all MT sites and in all molecular subtypes of MT, as well as a boost in the proliferation marker MKI67 in all phenotypes (p < 0.001).

Apart from the expected downregulation of hormone receptors and upregulation of Ki-67 in all tumor subtypes of MT compared to PT, ERBB2 upregulation was observed in MT samples from triple-negative PT patients (p = 0.292), whereas ERBB2 overexpression was particularly significant in brain MTs in initially triple-negative PT BC (p = 0.023). Other trials comparing HER2 PT and MT status have evidenced HER2 receptor dynamics [22, 3336], but the present study is one of the first to demonstrate significantly increased HER2 levels in cerebral entities originating from triple-negative BC PTs [3740].

Diagnostic potential for liquid biopsy and rebiopsy, and the therapeutic consequences

The discordances between PT and MT mRNA biomarker assessments caused by receptor conversion call for dynamic monitoring of BC tumor biomarkers, preferably via liquid biopsy or via rebiopsy of metastatic lesions, based on soluble receptors or receptor MRD status, i.e. disseminated tumor cells (DTCs) or circulating tumor cells (CTCs) as precursors of metastatic lesions [20, 21, 4143]. The presence of CTCs in peripheral blood is a known independent predictor of poor progression free survival (PFS) and overall survival (OS) in MBC [20, 4447].

Further clinical studies are required to analyze the potential benefit of extending the indication for HER2-targeted therapies, for example, for brain-metastasized patients with initially triple-negative BC PTs, either via dual blockade by trastuzumab/pertuzumab or via agents such as T-DM1, which was shown to be superior in the EMILIA study [48, 49], or possibly lapatinib, a dual tyrosine kinase inhibitor that interferes with both the epidermal growth factor receptor (EGFR) and HER2 signaling pathways. A recently developed murine model suggests improved anti-tumor efficacy with lapatinib-loaded human serum albumin nanoparticles in triple-negative BC metastasis to the brain [50].

Determination of HER2 status of CTCs may help to optimize individualized treatment solutions, especially in the case of metastatic sites which are unavailable or suboptimal for rebiopsy. Moreover, HER2-CTC positivity in patients with initially triple-negative PT could serve as an additional criterion to perform cerebral imaging earlier, before the onset of severe neurological symptoms. In this context, the DETECT Study group has addressed the value of CTC HER2 overexpression in predicting the HER2 status of metastases. However, they were unable to demonstrate any significant change in HER2 expression between PT and MT [51].

Concordance of RT-qPCR and IHC in assessing tumor biomarkers in the PT and MT settings

In our study, assessments of BC biomarkers and their dynamics from PT to MT showed a high degree of concordance between mRNA quantification with the well-established IHC methodology, the gold standard in immunophenotyping.

As shown in Table 2, the concordance of these two methodologies was 81% (κ 0.51) in PT vs. 84% (κ 0.34) in MT for ER/ESR1; 70% (κ 0.10) in PT vs. 78% (κ −0.32) in MT for PR/PGR; and 100% in PT vs. 89% in MT for HER2/ERBB2. These concordance rates are consistent with multiple recent prospective-retrospective studies using a similar mRNA quantification methodology. Both the FinHer and the S080 trial reported concordance rates > 90% between RT-qPCR and image-based IHC [52].

Several methodological limitations to measuring biomarker changes as reported here warrant discussion. On the one hand, the feasibility of rebiopsies, especially before each new therapy line, is limited at various metastatic sites. On the other hand, tumor heterogeneity both within the PT and the MT sites [40] as well as between these two entities and the surrogate markers of MRD, foremost the CTCs, present further limitations.

Another limitation to our findings arises from the structure of our patient population, which was a series of cases rather than a representative general population sample. The relatively young age at primary diagnosis can be explained by the large number of triple-negative cases (25%) and brain metastases (28%).


We observed a tendency in biomarker conversion towards a more aggressive phenotype with significant downregulation of ESR1 and PGR in biopsies from all MT sites and in all molecular subtypes of MT, as well as a boost in the proliferation marker MKI67 in all phenotypes (p < 0.001) The discordance in mRNA biomarker assessment between PT and MT due to receptor conversion necessitates dynamic monitoring of tumor biomarkers, possibly via liquid biopsy, e.g. circulating tumor cells (CTCs), or rebiopsy of metastatic lesions.

In patients with initially triple-negative PTs, detection of increased HER2 levels in the MT biopsy correlates significantly with brain and bone metastatic progression. To the best of our knowledge, this study is one of the first so far to imply the correlation of HER2 overexpression in initially triple-negative BC and brain metastasis. This tendency could be caused by substantial HER2/ERBB2 upregulation or clonal progression in the course of the BC metastatic process. In this context, robust real-time HER2 monitoring of CTC-HER2 may, hypothetically, predict metastasis to brain or bone and affect diagnostic and therapeutic decision making. Determining the HER2 status of CTCs might help to optimize individualized treatment solutions, especially in the case of metastatic sites which are unavailable or suboptimal for rebiopsy.

Overall, RT-qPCR assessment of breast cancer target genes and their mRNA expression is methodologically highly concordant with IHC protein analysis of the tumor biology of both PTs and MTs, further supporting multiple recent prospective-retrospective studies based on similar mRNA quantification methodology. The hypothesis-generating nature of the findings from the present study calls for additional studies in order to comprehensively establish and broaden the evidence base for this technique.



The patient cohort was selected by screening the tumor banks of two institutions (Heidelberg University Hospital, Heidelberg, Germany and Zurich University Hospital, Zurich, Switzerland) for formalin-fixed, paraffin-embedded (FFPE) matched pairs of primary and metastatic BC tissue samples.

Patients were enrolled in the study from April 2011 through May 2015. The inclusion criterion was enrollment in MBC studies in Heidelberg or Zurich with the availability of matched pair samples of the primary breast tumor and an appropriate metastatic biopsy, irrespective of age at initial diagnosis or metastatic entity.

This study was a part of a previously approved breast cancer project at the University of Zurich, ethics approval no. KEK-2012-553. Ethical approval for the cohort from Heidelberg was obtained from the Ethics Committee of the Medical Faculty of the University of Heidelberg, approval no. S-295/2009.

Immunohistochemistry (IHC)

Conventional immunostaining of sections of FFPE primary and metastatic tumor tissue for ER, PR, HER2, and Ki-67 was performed at the pathology laboratories of the two study sites according to their local standard procedures for ER (clone 1D5), PR (clone PgR636), and HER2 (A0485) in both PT and MT tissue.

ER and PR results were considered positive if at least 10% of cancer cells stained positive. This cut-off was chosen for two reasons: (1) to be able to distinguish more clearly between hormone-receptor positivity and negativity and (2) because low ER+/HER2− tumors have been shown to be more similar to triple-negative tumors than the usual type of ER+ tumors, and are not clearly endocrine responsive [53].

Ki-67 assays were analyzed by determining the proportion of positively stained relative to all cancer cell nuclei in the tissue section, expressed as a percentage between 0 and 100%. Pathologists at the respective institution interpreted the ER, PR, HER2, and Ki-67 immunostaining results in accordance with local standard practice.

Chromogenic in situ hybridization (CISH)

Tumors with a score of 2+ or 3+ (on a scale from 0 to 3+) for HER2 expression as determined by IHC were further analyzed for HER2 gene amplification by CISH in one of two central laboratories. The HER2 status was considered positive if six or more gene copies per nucleus were present. HER2 status was considered positive if CISH for HER2 was positive, and negative if CISH was negative, regardless of the degree of HER2 protein expression as determined by IHC [52].

Real time qPCR (RT-qPCR)

RNA was extracted using a bead-based extraction method (RNXtract® IVD kits, BioNTech Diagnostics GmbH, Mainz, Germany). Multiplex RT-qPCR utilized MammaTyper IVD® kits for ESR1/PGR/ERBB2 and MKI67 (BioNTech Diagnostics GmbH). After pathology confirmed that tissue sections were representative for the presence of cancer, a single whole-face 10-μm-thick slice from each FFPE tumor block was processed with the RNXtract® RNA extraction kit (BioNTech Diagnostics GmbH) using a magnetic particle-based assay, according to previously established protocols [52]. RT-qPCR was performed using the MammaTyper® kit (BioNTech Diagnostics GmbH) for ESR1, PGR, ERBB2, and MKI67, and the two reference genes B2M and CALM2, on a Versant® kPCR system (Siemens, Erlangen, Germany). This involved applying one cycle of primer-specific reverse transcription followed by 40 cycles of nucleic acid amplification [52, 54]. The median quantification cycles (Cq) for each of the four genes of interest (GOI) were normalized against the two reference genes (REF) and presented as ΔΔCq values relative to the positive control, obtained after subtracting the ΔCq value of the positive control (pc) from the ΔCq of the sample (s) by the formula: 40−ΔΔCq(GOI)s = 40 − ((Cq[GOI]s − mean Cq[REF]s) − (Cq[GOI]pc − mean Cq[REF]pc)).

Sensitivity studies as previously reported [55] were performed to exclude the major influence of varying tumor cell content for assay results. A number of cases with particularly low levels of invasive carcinoma and varying amounts of ductal carcinoma in situ were analyzed before and after macrodissection, subsequently confirming that tumor cell content did not influence the final test result. This enabled the exclusion of any major influence of tumor cell content (TCC) on ERBB2, ESR1, PGR, and MKI67 mRNA expression.

Definition of breast cancer biological subtypes

After identifying each of the four biomarkers as positive or negative, the molecular subtype of each tumor was determined using the currently proposed IHC-based breast cancer molecular subtyping algorithm [56]. In concordance with previous studies using mRNA phenotype assessment [52], luminal A cancers were defined as having a high ESR1 or PGR mRNA content and a low ERBB2 and MKI67 content. Luminal B cancers were defined as having high cancer and MKI67 content, or high ESR1 content but low PGR and ERBB2 content. Triple-negative cancers comprised those cancers that had low ESR1, PGR and ERBB2 mRNA content, irrespective of cancer MKI67 mRNA content.

The same scheme was used to categorize the cancers according to the IHC and CISH results, but using protein expression (at IHC) and the number of HER2 gene copies (at CISH) instead of cancer mRNA content. For example, cancers that were ER and PR positive (with ≥10% of nuclei positive in each staining) and HER2 negative (by CISH), and had low Ki-67 (<20% of nuclei staining positive at IHC) were considered luminal A cancers. This cut-off was chosen based on our own cases and Ki-67 staining results [57] as well as the cut-off from the 2013 St. Gallen consensus [56].

Statistical methods

To analyze and compare quantitative RT-qPCR marker levels, this study explored the changes during tumor progression (by subtype), location, and time interval. RT-qPCR and IHC results were compared between paired primary and metastatic sites. RNA levels were normalized according to the 40−ΔΔCq method. Changes in RNA marker levels were analyzed qualitatively and quantitatively to visualize specific biomarker profiles based on tumor subtype, metastatic site, and time between PT and MT biopsy.

Demographic data and clinical characteristics were described as frequency and percentage, median and range, or mean and standard deviation. Groups were compared using the Wilcoxon/Mann–Whitney rank test or Fisher’s exact test, as appropriate. A significance level of 5% was chosen.


BC: breast cancer; MBC: metastatic breast cancer; PT: primary tumor; MT: metastatic tumor; DTCs: disseminated tumor cells; CTCs: circulating tumor cells; ER: estrogen receptor; PR: progesterone receptor; HER2: human epidermal growth factor receptor 2; CISH: Chromogenic in situ hybridization; ESR1: Estrogen Receptor 1 gene; PGR: Progesterone Receptor gene; ERBB2: Receptor tyrosine-protein kinase erbB-2 gene; IHC: immunohistochemistry; RT-qPCR: real-time quantitative polymerase chain reaction; EGFR: epidermal growth factor receptor; TCC: tumor cell content; MRD: minimal residual disease.

Authors’ contributions

Authorship was designated based on the guidelines promulgated by the International Committee of Medical Journal Editors (2004). All persons who meet criteria for authorship are listed as authors on the title page. The contribution of each of these persons to this study is as follows: SS and MW made substantial contributions to the conception and design, interpreted the data, and prepared and edited the manuscript. RW, AHa, TD, LS, ZV, and BS contributed to the acquisition, analysis, and interpretation of the data. FS, CD, CS, AHe, FAT, and PS checked the quality of the data. AT, AS, and SB critically revised the manuscript for important intellectual content. All authors read and approved the final manuscript.


RMW is the founder and an employee of STRATIFYER Molecular Pathology GmbH and participated in developing the RT-qPCR system. All other authors declare that they have no competing interests.


No grants or other forms of financial support were received by any of the authors in relation to this study or the writing of this article.


1. Lee JS, Magbanua MJM, Park JW. Circulating tumor cells in breast cancer: applications in personalized medicine. Breast Cancer Res Treat. 2016; 160:411–24.

2. Witzel I, Müller V. Targeted Therapies in Breast Cancer: New Approaches and Old Challenges. Breast Care (Basel). 2015; 10:157–8.

3. Braun S, Vogl FD, Naume B, Janni W, Osborne MP, Coombes RC, Schlimok G, Diel IJ, Gerber B, Gebauer G, Pierga JY, Marth C, Oruzio D, et al. A Pooled Analysis of Bone Marrow Micrometastasis in Breast Cancer. N Engl J Med. 2005; 353:793–802.

4. Koboldt DC, Fulton RS, McLellan MD, Schmidt H, Kalicki-Veizer J, McMichael JF, Fulton LL, Dooling DJ, Ding L, Mardis ER, Wilson RK, Ally A, Balasundaram M, et al. Comprehensive molecular portraits of human breast tumours. Nature. 2012; 490:61–70.

5. Perou CM, Sørlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge O, Pergamenschikov A, Williams C, et al. Molecular portraits of human breast tumours. Nature. 2000; 406:747–52.

6. Alunni-Fabbroni M, Müller V, Fehm T, Janni W, Rack B. Monitoring in metastatic breast cancer: is imaging outdated in the era of circulating tumor cells? Breast Care (Basel). 2014; 9:16–21.

7. Lindström LS, Karlsson E, Wilking UM, Johansson U, Hartman J, Lidbrink EK, Hatschek T, Skoog L, Bergh J. Clinically used breast cancer markers such as estrogen receptor, progesterone receptor, and human epidermal growth factor receptor 2 are unstable throughout tumor progression. J Clin Oncol. 2012; 30:2601–8.

8. Yang YF, Liao YY, Li LQ, Xie SR, Xie YF, Peng NF. Changes in ER, PR and HER2 receptors status after neoadjuvant chemotherapy in breast cancer. Pathol Res Pract. 2013; 209:797–802.

9. Thompson AM, Jordan LB, Quinlan P, Anderson E, Skene A, Dewar JA, Purdie CA. Prospective comparison of switches in biomarker status between primary and recurrent breast cancer: the Breast Recurrence In Tissues Study (BRITS). Breast Cancer Res. 2010; 12:R92.

10. Zidan J, Dashkovsky I, Stayerman C, Basher W, Cozacov C, Hadary A. Comparison of HER-2 overexpression in primary breast cancer and metastatic sites and its effect on biological targeting therapy of metastatic disease. Br J Cancer. 2005; 93:552–6.

11. Edgerton SM, Moore D, Merkel D, Thor AD. erbB-2 (HER-2) and breast cancer progression. Appl Immunohistochem Mol Morphol. 2003; 11:214–21.

12. Tanner M, Järvinen P, Isola J. Amplification of HER-2/neu and topoisomerase IIalpha in primary and metastatic breast cancer. Cancer Res. 2001; 61:5345–8.

13. Gancberg D, Di Leo A, Cardoso F, Rouas G, Pedrocchi M, Paesmans M, Verhest A, Bernard-Marty C, Piccart MJ, Larsimont D. Comparison of HER-2 status between primary breast cancer and corresponding distant metastatic sites. Ann Oncol. 2002; 13:1036–43.

14. Niehans GA, Singleton TP, Dykoski D, Kiang DT. Stability of HER-2/neu expression over time and at multiple metastatic sites. J Natl Cancer Inst. 1993; 85:1230–5.

15. Masood S, Bui MM. Assessment of Her-2/neu overexpression in primary breast cancers and their metastatic lesions: an immunohistochemical study. Ann Clin Lab Sci. 2000; 30:259–65.

16. Shimizu C, Fukutomi T, Tsuda H, Akashi-Tanaka S, Watanabe T, Nanasawa T, Sugihara K. c-erbB-2 protein overexpression and p53 immunoreaction in primary and recurrent breast cancer tissues. J Surg Oncol. 2000; 73:17–20.

17. Gutierrez MC, Detre S, Johnston S, Mohsin SK, Shou J, Allred DC, Schiff R, Osborne CK, Dowsett M. Molecular Changes in Tamoxifen-Resistant Breast Cancer: Relationship Between Estrogen Receptor, HER-2, and p38 Mitogen-Activated Protein Kinase. J Clin Oncol. 2005; 23:2469–76.

18. Regitnig P, Schippinger W, Lindbauer M, Samonigg H, Lax SF. Change of HER-2/neu status in a subset of distant metastases from breast carcinomas. J Pathol. 2004; 203:918–26.

19. Hartkopf AD, Banys M, Fehm T. HER2-Positive DTCs/CTCs in Breast Cancer. Recent results in cancer research Fortschritte der Krebsforschung Progres dans les recherches sur le cancer. 2012 ; 203–15.

20. Wallwiener M, Riethdorf S, Hartkopf AD, Modugno C, Nees J, Madhavan D, Sprick MR, Schott S, Domschke C, Baccelli I, Schönfisch B, Burwinkel B, Marmé F, et al. Serial enumeration of circulating tumor cells predicts treatment response and prognosis in metastatic breast cancer: a prospective study in 393 patients. BMC Cancer. 2014; 14:512.

21. Wallwiener M, Hartkopf AD, Riethdorf S, Nees J, Sprick MR, Schönfisch B, Taran FA, Heil J, Sohn C, Pantel K, Trumpp A, Schneeweiss A. The impact of HER2 phenotype of circulating tumor cells in metastatic breast cancer: a retrospective study in 107 patients. BMC Cancer. 2015; 15:403.

22. Arihiro K, Oda M, Ogawa K, Tominaga K, Kaneko Y, Shimizu T, Matsumoto S, Oda M, Kurita Y, Taira Y. Discordant HER2 Status Between Primary Breast Carcinoma and Recurrent/Metastatic Tumors Using Fluorescence In Situ Hybridization on Cytological Samples. Jpn J Clin Oncol. 2013; 43:55–62.

23. Hoefnagel LD, van de Vijver MJ, van Slooten HJ, Wesseling P, Wesseling J, Westenend PJ, Bart J, Seldenrijk CA, Nagtegaal ID, Oudejans J, van der Valk P, van der Groep P, de Vries EG, et al. Receptor conversion in distant breast cancer metastases. Breast Cancer Res. 2010; 12:R75.

24. Murtaza M, Dawson SJ, Pogrebniak K, Rueda OM, Provenzano E, Grant J, Chin SF, Tsui DWY, Marass F, Gale D, Ali HR, Shah P, Contente-Cuomo T, et al. Multifocal clonal evolution characterized using circulating tumour DNA in a case of metastatic breast cancer. Nat Commun. 2015; 6:8760.

25. Goh G, Schmid R, Guiver K, Arpornwirat W, Chitapanarux I, Ganju V, Im SA, Kim SB, Dechaphunkul A, Maneechavakajorn J, Spector N, Yau T, Afrit M, et al. Clonal Evolutionary Analysis during HER2 Blockade in HER2-Positive Inflammatory Breast Cancer: A Phase II Open-Label Clinical Trial of Afatinib +/− Vinorelbine. PLOS Med. 2016; 13:e1002136.

26. Wang Y, Waters J, Leung ML, Unruh A, Roh W, Shi X, Chen K, Scheet P, Vattathil S, Liang H, Multani A, Zhang H, Zhao R, et al. Clonal evolution in breast cancer revealed by single nucleus genome sequencing. Nature. 2014; 512:155–60.

27. Wang P, Bahreini A, Gyanchandani R, Lucas PC, Hartmaier RJ, Watters RJ, Jonnalagadda AR, Trejo Bittar HE, Berg A, Hamilton RL, Kurland BF, Weiss KR, Mathew A, et al. Sensitive Detection of Mono- and Polyclonal ESR1 Mutations in Primary Tumors, Metastatic Lesions, and Cell-Free DNA of Breast Cancer Patients. Clin Cancer Res. 2016; 22:1130–7.

28. Goswami RS, Patel KP, Singh RR, Meric-Bernstam F, Kopetz ES, Subbiah V, Alvarez RH, Davies MA, Jabbar KJ, Roy-Chowdhuri S, Lazar AJ, Medeiros LJ, Broaddus RR, et al. Hotspot Mutation Panel Testing Reveals Clonal Evolution in a Study of 265 Paired Primary and Metastatic Tumors. Clin Cancer Res. 2015; 21:2644–51.

29. Krøigård AB, Larsen MJ, Lænkholm AV, Knoop AS, Jensen JD, Bak M, Mollenhauer J, Kruse TA, Thomassen M. Clonal expansion and linear genome evolution through breast cancer progression from pre-invasive stages to asynchronous metastasis. Oncotarget. 2015; 6:5634–49. doi: 10.18632/oncotarget.3111.

30. Xiangying M, Santai S, Zefei J, Bing S, Tao W, Shaohua Z, Shikai W. Receptor conversion in metastatic breast cancer: a prognosticator of survival. Oncotarget. 2016; 7:71887–903. doi: 10.18632/oncotarget.12114.

31. Kimbung S, Kovács A, Danielsson A, Bendahl PO, Lövgren K, Frostvik Stolt M, Tobin NP, Lindström L, Bergh J, Einbeigi Z, Fernö M, Hatschek T, Hedenfalk I. Contrasting breast cancer molecular subtypes across serial tumor progression stages: biological and prognostic implications. Oncotarget. 2015; 6:33306–18. doi: 10.18632/oncotarget.5089.

32. Hoefnagel LD, Moelans CB, Meijer SL, van Slooten HJ, Wesseling P, Wesseling J, Westenend PJ, Bart J, Seldenrijk CA, Nagtegaal ID, Oudejans J, van der Valk P, van Gils CH, et al. Prognostic value of estrogen receptor α and progesterone receptor conversion in distant breast cancer metastases. Cancer. 2012; 118:4929–35.

33. de Dueñas EM, Hernández AL, Zotano ÁG, Carrión RM, López-Muñiz JI, Novoa SA, Rodríguez ÁL, Fidalgo JA, Lozano JF, Gasión OB, Carrascal EC, Capilla AH, López-Barajas IB, et al. Prospective evaluation of the conversion rate in the receptor status between primary breast cancer and metastasis: results from the GEICAM 2009-03 ConvertHER study. Breast Cancer Res Treat. 2014; 143:507–15.

34. Aoyama K, Kamio T, Nishikawa T, Kameoka S. A Comparison of HER2/neu Gene Amplification and Its Protein Overexpression Between Primary Breast Cancer and Metastatic Lymph Nodes. Jpn J Clin Oncol. 2010; 40:613–9.

35. Duchnowska R, Dziadziuszko R, Trojanowski T, Mandat T, Och W, Czartoryska-Arłukowicz B, Radecka B, Olszewski W, Szubstarski F, Kozłowski W, Jarosz B, Rogowski W, Kowalczyk A, et al. Conversion of epidermal growth factor receptor 2 and hormone receptor expression in breast cancer metastases to the brain. Breast Cancer Res. 2012; 14:R119.

36. Nakamura R, Yamamoto N, Onai Y, Watanabe Y, Kawana H, Miyazaki M. Importance of confirming HER2 overexpression of recurrence lesion in breast cancer patients. Breast Cancer. 2013; 20:336–41.

37. Arslan C, Sari E, Aksoy S, Altundag K. Variation in hormone receptor and HER-2 status between primary and metastatic breast cancer: review of the literature. Expert Opin Ther Targets. 2011; 15:21–30.

38. Houssami N, Macaskill P, Balleine RL, Bilous M, Pegram MD. HER2 discordance between primary breast cancer and its paired metastasis: tumor biology or test artefact? Insights through meta-analysis. Breast Cancer Res Treat. 2011; 129:659–74.

39. St Romain P, Madan R, Tawfik OW, Damjanov I, Fan F. Organotropism and prognostic marker discordance in distant metastases of breast carcinoma: fact or fiction? A clinicopathologic analysis. Hum Pathol. 2012; 43:398–404.

40. Wu JM, Fackler MJ, Halushka MK, Molavi DW, Taylor ME, Teo WW, Griffin C, Fetting J, Davidson NE, De Marzo AM, Hicks JL, Chitale D, Ladanyi M, et al. Heterogeneity of breast cancer metastases: comparison of therapeutic target expression and promoter methylation between primary tumors and their multifocal metastases. Clin Cancer Res. 2008; 14:1938–46.

41. Stefanovic S, Diel I, Sinn P, Englert S, Hennigs A, Mayer C, Schott S, Wallwiener M, Blumenstein M, Golatta M, Heil J, Rom J, Sohn C, et al. Disseminated Tumor Cells in the Bone Marrow of Patients with Operable Primary Breast Cancer: Prognostic Impact in Immunophenotypic Subgroups and Clinical Implication for Bisphosphonate Treatment. Ann Surg Oncol. 2016; 23:757–66.

42. Fehm T, Müller V, Aktas B, Janni W, Schneeweiss A, Stickeler E, Lattrich C, Löhberg CR, Solomayer E, Rack B, Riethdorf S, Klein C, Schindlbeck C, et al. HER2 status of circulating tumor cells in patients with metastatic breast cancer: a prospective, multicenter trial. Breast Cancer Res Treat. 2010; 124:403–12.

43. Baccelli I, Schneeweiss A, Riethdorf S, Stenzinger A, Schillert A, Vogel V, Klein C, Saini M, Bäuerle T, Wallwiener M, Holland-Letz T, Höfner T, Sprick M, et al. Identification of a population of blood circulating tumor cells from breast cancer patients that initiates metastasis in a xenograft assay. Nat Biotechnol. 2013; 31:539–44.

44. Cristofanilli M, Budd GT, Ellis MJ, Stopeck A, Matera J, Miller MC, Reuben JM, Doyle GV, Allard WJ, Terstappen LW, Hayes DF. Circulating tumor cells, disease progression, and survival in metastatic breast cancer. N Engl J Med. 2004; 351:781–91.

45. Giordano A, Gao H, Anfossi S, Cohen E, Mego M, Lee BN, Tin S, De Laurentiis M, Parker CA, Alvarez RH, Valero V, Ueno NT, De Placido S, et al. Epithelial-Mesenchymal Transition and Stem Cell Markers in Patients with HER2-Positive Metastatic Breast Cancer. Mol Cancer Ther. 2012; 11:2526–34.

46. Giuliano M, Giordano A, Jackson S, Hess KR, De Giorgi U, Mego M, Handy BC, Ueno NT, Alvarez RH, De Laurentiis M, De Placido S, Valero V, Hortobagyi GN, et al. Circulating tumor cells as prognostic and predictive markers in metastatic breast cancer patients receiving first-line systemic treatment. Breast Cancer Res. 2011; 13:R67.

47. Hayes DF, Cristofanilli M, Budd GT, Ellis MJ, Stopeck A, Miller MC, Matera J, Allard WJ, Doyle GV, Terstappen LW. Circulating Tumor Cells at Each Follow-up Time Point during Therapy of Metastatic Breast Cancer Patients Predict Progression-Free and Overall Survival. Clin Cancer Res. 2006; 12:4218–24.

48. Krop IE, Lin NU, Blackwell K, Guardino E, Huober J, Lu M, Miles D, Samant M, Welslau M, Diéras V. Trastuzumab emtansine (T-DM1) versus lapatinib plus capecitabine in patients with HER2-positive metastatic breast cancer and central nervous system metastases: a retrospective, exploratory analysis in EMILIA. Ann Oncol. 2015; 26:113–9.

49. Baselga J, Lewis Phillips GD, Verma S, Ro J, Huober J, Guardino AE, Samant MK, Olsen S, de Haas SL, Pegram MD. Relationship between Tumor Biomarkers and Efficacy in EMILIA, a Phase III Study of Trastuzumab Emtansine in HER2-Positive Metastatic Breast Cancer. Clin Cancer Res. 2016; 22:3755–63.

50. Wan X, Zheng X, Pang X, Pang Z, Zhao J, Zhang Z, Jiang T, Xu W, Zhang Q, Jiang X. Lapatinib-loaded human serum albumin nanoparticles for the prevention and treatment of triple-negative breast cancer metastasis to the brain. Oncotarget. 2014; 7:34038–51. doi: 10.18632/oncotarget.8697.

51. Aktas B, Kasimir-Bauer S, Müller V, Janni W, Fehm T, Wallwiener D, Pantel K, Tewes M, DETECT Study Group. Comparison of the HER2, estrogen and progesterone receptor expression profile of primary tumor, metastases and circulating tumor cells in metastatic breast cancer patients. BMC Cancer. 2016; 16:522.

52. Wirtz RM, Sihto H, Isola J, Heikkilä P, Kellokumpu-Lehtinen PL, Auvinen P, Turpeenniemi-Hujanen T, Jyrkkiö S, Lakis S, Schlombs K, Laible M, Weber S, Eidt S, et al. Biological subtyping of early breast cancer: a study comparing RT-qPCR with immunohistochemistry. Breast Cancer Res Treat. 2016; 157:437–46.

53. Gloyeske NC, Dabbs DJ, Bhargava R. Low ER+ breast cancer: Is this a distinct group? Am J Clin Pathol. 2014; 141:697–701.

54. Laible M, Schlombs K, Kaiser K, Veltrup E, Herlein S, Lakis S, Stöhr R, Eidt S, Hartmann A, Wirtz RM, Sahin U. Technical validation of an RT-qPCR in vitro diagnostic test system for the determination of breast cancer molecular subtypes by quantification of ERBB2, ESR1, PGR and MKI67 mRNA levels from formalin-fixed paraffin-embedded breast tumor specimens. BMC Cancer. 2016; 16:398.

55. Kotoula V, Kalogeras KT, Kouvatseas G, Televantou D, Kronenwett R, Wirtz RM, Fountzilas G. Sample parameters affecting the clinical relevance of RNA biomarkers in translational breast cancer research. Virchows Arch. 2013; 462:141–54.

56. Goldhirsch A, Winer EP, Coates AS, Gelber RD, Piccart-Gebhart M, Thurlimann B, Senn HJ, Albain KS, Andre F, Bergh J, Bonnefoi H, Bretel-Morales D, Burstein H, et al. Personalizing the treatment of women with early breast cancer: highlights of the St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2013. Ann Oncol. 2013; 24:2206–23.

57. Braun L, Mietzsch F, Seibold P, Schneeweiss A, Schirmacher P, Chang-Claude J, Peter Sinn H, Aulmann S. Intrinsic breast cancer subtypes defined by estrogen receptor signalling-prognostic relevance of progesterone receptor loss. Mod Pathol. 2013; 26:1161–71.

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