Oncotarget

Research Papers:

Identification of patient-specific and tumor-shared T cell receptor sequences in renal cell carcinoma patients

Chiara Massa, Harlan Robins, Cindy Desmarais, Dagmar Riemann, Corinna Fahldieck, Paolo Fornara and Barbara Seliger _

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Oncotarget. 2017; 8:21212-21228. https://doi.org/10.18632/oncotarget.15064

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Abstract

Chiara Massa1, Harlan Robins2, Cindy Desmarais2, Dagmar Riemann1, Corinna Fahldieck1, Paolo Fornara3, Barbara Seliger1

1Institute of Medical Immunology, Martin Luther University Halle-Wittenberg, Halle, Saale 06112, Germany

2Adaptive Biotechnologies Corp, Seattle, WA 98102, USA

3Clinic of Urology, Martin Luther University Halle-Wittenberg, Halle, Saale 06112, Germany

Correspondence to:

Barbara Seliger, email: barbara.seliger@uk-halle.de

Keywords: TCR sequencing, renal cell carcinoma, immune response, immune monitoring, immune therapy

Received: October 25, 2016     Accepted: January 09, 2017     Published: February 03, 2017

ABSTRACT

A major requirement for cancer immunotherapy is the development of biomarkers for prognosis and for monitoring therapy response. In an attempt to evaluate the immune response of renal cell carcinoma (RCC) patients, tumor lesions and / or blood samples from 12 RCC patients underwent deep T cell receptor (TCR) sequencing. Despite the low number of samples, different TCR distribution patterns could be detected. Most of the RCC patients presented “patient-specific” TCR sequences, and those clonotypes were present at higher frequency in tumor lesions suggesting a specific extravasation from the blood. Comparison among the tumor samples revealed also “patient-shared” TCR patterns. Indeed, a central core of 16 different TCRs were shared by 3 patients, whereas other 6 patients shared between 4 and 6 TCR sequences, with two sub-groups sharing 12 to 17 different clonotypes. The relative frequencies of shared clonotypes were very different varying from < 1% to a maximum of 37% of the total TCR repertoire. These data confirm the presence of tumor-specific TCR within the cancer tissue and suggest the existence of shared epitopes among different patients that might be used as targets for tumor immunotherapy.


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