Oncotarget

Research Papers:

A four-gene signature predicts survival in clear-cell renal-cell carcinoma

Jun Dai, Yuchao Lu, Jinyu Wang, Lili Yang, Yingyan Han, Ying Wang, Dan Yan, Qiurong Ruan _ and Shaogang Wang

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Oncotarget. 2016; 7:82712-82726. https://doi.org/10.18632/oncotarget.12631

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Abstract

Jun Dai1,*, Yuchao Lu2,*, Jinyu Wang3, Lili Yang4, Yingyan Han1, Ying Wang4, Dan Yan5, Qiurong Ruan4, Shaogang Wang2

1Cancer Biology Research Center, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

2Department and Institute of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

3Department of Orthopaedics and Traumatology, Prince of Wales Hospital, The Chinese University of Hong Kong SAR, Hong Kong, China

4Institute of Pathology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

5Department of Pathology, Medical College, Wuhan University of Science and Technology, Wuhan, China

*These authors have contributed equally to this work

Correspondence to:

Qiurong Ruan, email: ruanqiurong@sina.com

Shaogang Wang, email: sgwangtjm@163.com

Keywords: ccRCC, prognosis, gene signature, tissue microarray, bioinformatics

Received: April 26, 2016    Accepted: September 25, 2016    Published: October 13, 2016

ABSTRACT

Clear-cell renal-cell carcinoma (ccRCC) is the most common pathological subtype of renal cell carcinoma (RCC), accounting for about 80% of RCC. In order to find potential prognostic biomarkers in ccRCC, we presented a four-gene signature to evaluate the prognosis of ccRCC. SurvExpress and immunohistochemical (IHC) staining of tissue microarrays were used to analyze the association between the four genes and the prognosis of ccRCC. Data from TCGA dataset revealed a prognostic prompt function of the four genes (PTEN, PIK3C2A, ITPA and BCL3). Further discovery suggested that the four-gene signature predicted survival better than any of the four genes alone. Moreover, IHC staining demonstrated a consistent result with TCGA, indicating that the signature was an independent prognostic factor of survival in ccRCC. Univariate and multivariate Cox proportional hazard regression analysis were conducted to verify the association of clinicopathological variables and the four genes’ expression levels with survival. The results further testified that the risk (four-gene signature) was an independent prognostic factors of both Overall Survival (OS) and Disease-free Survival (DFS) (P<0.05). In conclusion, the four-gene signature was correlated with the survival of ccRCC, and therefore, may help to provide significant clinical implications for predicting the prognosis of patients.


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